View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7093_high_6 (Length: 285)
Name: NF7093_high_6
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7093_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 47234046 - 47233786
Alignment:
| Q |
17 |
cacctagccactgcatgaatccagagtataggattcgaactagctccactcccaaatgcaacgataggattgcaatgcgttctgcaccaaccacccatgt |
116 |
Q |
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| T |
47234046 |
cacctagccactgcatgaatccagagtataggattcgaactagctccactcccaaatgcaacgataggattgcaatgcgttctgcaccaaccacccatgt |
47233947 |
T |
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| Q |
117 |
tactgaggaaagggttgttaaccgccgtgagtttactatata----aataactctcttctttccnnnnnnncctatctatttaaatataaaataactaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47233946 |
tactgaggaaagggttgttaaccgccgtgagtttactatataaattaataactctcttctttcctttttttcctatctatttaaatataaaataactaat |
47233847 |
T |
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| Q |
213 |
ggtactagattattagatgatgattaagtacttaatcaaactcatcaaagccacatagtat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47233846 |
ggtactagattattagatgatgattaagtacttaatcaaactcatcaaagccacatagtat |
47233786 |
T |
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