View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7093_low_4 (Length: 438)
Name: NF7093_low_4
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7093_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 197 - 426
Target Start/End: Complemental strand, 32630917 - 32630688
Alignment:
| Q |
197 |
cattaacattcttctactagagatcaactatgttgaatccttcagagagcaaatattagcttgttatcatggggctcaactttgcaaactgctgtggagg |
296 |
Q |
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| T |
32630917 |
cattaacattcttctactagagatcaactatgttgaatccttcagagagcaaatattagcttgttatcatggggctcaactttgcaaactgctgtggagg |
32630818 |
T |
|
| Q |
297 |
tttcctttccctatcttttgggatttcctccactgcctctcaccttccacaaccaatatggattccatcagtttttcctcgcccaaatcaagtcttttgc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32630817 |
tttcctttccctatcttttgggatttcctccactgcctctcaccttccacaaccaatatggattccatcagtttttcctcgcccaaatcaagtcttttgc |
32630718 |
T |
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| Q |
397 |
cgcattttaactcgccactaatcacaggtt |
426 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
32630717 |
cgcattttaactcgccactaatcactggtt |
32630688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 32631099 - 32630945
Alignment:
| Q |
19 |
atttatgctgtaaaactttgttttcacttttggatagcattgtgctgtaaaactagccgtttagtcagagcgctttcaagtttacggttttagttagaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631099 |
atttatgctgtaaaactttgttttcacttttggatagcattgtgctgtaaaactagccgtttagtcagagcgctttcaagtttacggttttagttagaca |
32631000 |
T |
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| Q |
119 |
tttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaatag |
173 |
Q |
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| T |
32630999 |
tttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaatag |
32630945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 32581871 - 32581716
Alignment:
| Q |
19 |
atttatgctgtaaaactttgttttcacttttggatagcatt-gtgctgtaaaactagccgtttagtcagagcgctttcaagtttacggttttagttagac |
117 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32581871 |
atttatgctgtaaaactttaatttcacttttggaccgcatttgtgctgtaaaactagccgtttagtcagagcgctttcaagtttatggttttagttagat |
32581772 |
T |
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| Q |
118 |
atttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaatag |
173 |
Q |
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||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| |
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| T |
32581771 |
atttgtatgttaaatttaagaagtttatttgtgccaggtctttgactttggaatag |
32581716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 32656864 - 32656737
Alignment:
| Q |
201 |
aacattcttctactagagatcaactatgttgaatccttcagagagcaaatattagcttgttatcatggggctcaactttgcaaactgctgtggaggtttc |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
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| T |
32656864 |
aacattcttctactagagatcaactatgttgaagccttcagagagcaaatattagcttgttatcatggggctcaactttgcaaactgtggtggagatatc |
32656765 |
T |
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| Q |
301 |
ctttccctatcttttgggatttcctcca |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32656764 |
ctttccctatcttttgggatttcctcca |
32656737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 32657044 - 32656890
Alignment:
| Q |
20 |
tttatgctgtaaaactttgttttcacttttggatagcatt-gtgctgtaaaactagccgtttagtcagagcgctttcaagtttacggttttagttagaca |
118 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||||||||| |||||||||||||| ||||||||| |||| || ||||||| ||||||| |
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| T |
32657044 |
tttatgctgtaaaactttgttttcacttttcgactacatttgtgctgtaaccctagccgtttagtcggagcgctttgaagtgtatggttttatttagaca |
32656945 |
T |
|
| Q |
119 |
tttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaatag |
173 |
Q |
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| T |
32656944 |
tttgtaagttaaaattaaatagtttatttgtggcaggtctttgactttggaatag |
32656890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 32581665 - 32581591
Alignment:
| Q |
251 |
attagcttgttatcatggggctcaactttgcaaactgctgtggaggtttcctttccctatcttttgggatttcct |
325 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
32581665 |
attagcttgttatcatggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttcct |
32581591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 32599965 - 32599898
Alignment:
| Q |
30 |
aaaactttgttttcacttttggatagcatt-gtgctgtaaaactagccgtttagtcagagcgctttcaa |
97 |
Q |
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|||||||||||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
32599965 |
aaaactttgttttcacttcaggacagcatttgtgctgtaaa-ctagccgtttagtcggagcgctttcaa |
32599898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 32656654 - 32656589
Alignment:
| Q |
361 |
ccatcagtttttcctcgcccaaatcaagtcttttgccgcattttaactcgccactaatcacaggtt |
426 |
Q |
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||||||||||||||| | |||||||||||| || || ||||||| ||||| |||||||||| |||| |
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| T |
32656654 |
ccatcagtttttccttgtccaaatcaagtcattcgctgcatttttactcgtcactaatcactggtt |
32656589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 41163608 - 41163515
Alignment:
| Q |
77 |
gtttagtcagagcgctttcaagtttacggttttagttagacatttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaa |
170 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||| |
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| T |
41163608 |
gtttagtcgaagcgctttcaagtttatggttttatttagacatttgtaagttaaatttacaaattttatttgtggcaggtctttgacttaggaa |
41163515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 41171409 - 41171327
Alignment:
| Q |
91 |
ctttcaagtttacggttttagttagacatttgtaagttaaatttaaaaagtttatttgtggcgggtctttgactttggaatag |
173 |
Q |
| |
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|||||||||||| |||||||||| | |||||||| ||||||||| ||| |||||||||||| |||||||||||||| ||||| |
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| T |
41171409 |
ctttcaagtttatggttttagttggtaatttgtaaattaaatttacaaattttatttgtggcaggtctttgactttgaaatag |
41171327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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