View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7093_low_5 (Length: 427)
Name: NF7093_low_5
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7093_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 4082575 - 4082962
Alignment:
| Q |
22 |
caggatcaagtggggtcacatttagacctatctgtgatttcccttatccaaacaaaccaattaataatttaatgctttagaagttagaacacattaaaca |
121 |
Q |
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| T |
4082575 |
caggatcaagtggggtcacatttagaccaatctgtgatttcccttatccaaacaaaccaattaatattttaatgctttagaagttagaacaaaataaa-a |
4082673 |
T |
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| Q |
122 |
taaaaaatttaatatttgtattcaacttttcaaggatttt-taattagatccttaaactaaaaaagttggtgattaaactttttcttgtggaaacaaaat |
220 |
Q |
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| T |
4082674 |
ttaaaaatacaatatttgtattcaacttttcaaggattttttaattagatccttaaactaaaaaagttggtgattaaactttttcatgtggaaacagaat |
4082773 |
T |
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| Q |
221 |
tgaggagaaaaattagtcattaccagtaacccaagaaatccacatagaagtaggtgaagaaatagcgagagcgatttgttcaggaaaatttaaagtgaca |
320 |
Q |
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| T |
4082774 |
tgaggagaaaaagtagtcattaccagtaatccaagaaatccacatagaagttggtgaagaaatagcgagagcgatttgttcaggaaaatttaaagtaacg |
4082873 |
T |
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| Q |
321 |
ttcattttgagccttggatgagtcataggcaagtcatcactgccccttcgcagtgatgaatcaaaccgacgagtcaccggtttaaacgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4082874 |
ttcattttgagccttggatgagtcataggcaagtcatcactgcctcttcgcagtgatgagtcaaaccgacgagtcaccggtttaaacgg |
4082962 |
T |
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