View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7094_high_2 (Length: 374)
Name: NF7094_high_2
Description: NF7094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7094_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 40082704 - 40082381
Alignment:
| Q |
19 |
gatctatggctcataagtgctcgattggttcttgagcttacatccctataatacaacaataatgctcaaacaatctggtaaatgtttctttcacattatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40082704 |
gatctatggctcataagtgctcgattggttcttgagcttacatccctataatacaacaataatgctcaaacaatctggtaaatgtttctttcacattatt |
40082605 |
T |
|
| Q |
119 |
tgaaatttatgctttcatttttagtttcaaaaccatacatagnnnnnnnnnnnnttacaacaaagttcattttttgaatttaataaaacaaagttcattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40082604 |
tgaaatttatgctttcatttttagtttcaaaaccatacatagaaaaaacaaaaattacaacaaagttcattttttgaatttaataaaacaaagttcattt |
40082505 |
T |
|
| Q |
219 |
tatatgttggaactccaataaattaacatgtcatgaaaaaatcatcatcccttttttcttttctttgcagtcctcaaataatattatgtggtcactccac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40082504 |
tatatgttggaactccaataaattaacatgtcatgaaaaaatcatcatcccttttttcttttctttgcagtcctcaaataatattatgtcgtcactccac |
40082405 |
T |
|
| Q |
319 |
tagttatgtaggatattactattc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40082404 |
tagttatgtaggatattactattc |
40082381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University