View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7094_low_1 (Length: 435)
Name: NF7094_low_1
Description: NF7094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7094_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 99 - 419
Target Start/End: Original strand, 743326 - 743647
Alignment:
| Q |
99 |
ccatacttacatctgcaagacgaactttgctagcgttgtcgtcttttttccc----caaagaaagaagttcaacttccagtttcactctcttccttaaaa |
194 |
Q |
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| T |
743326 |
ccatacttacatctgcaagacgaactttgctagcgttgtcgtcttttttcccggcccaaagaaagaagttcaacttccagtttcactctcttccttaaaa |
743425 |
T |
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| Q |
195 |
taaattcaatatcctttggctgactatcaaattgaactcttaacaacagtaggattcatcttttagctccaacattatattacaataaaaatatcaacat |
294 |
Q |
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| T |
743426 |
taaattcaatatcctttg--tgactatcaaattgaactct-aacaacagtaggattcatcttttagctccaacattatattacaataaaaatatcaacat |
743522 |
T |
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| Q |
295 |
gacgagataatcatatatataatatttgtgaacttaaaaacacaaactaaatatgcctaaatattaatccggtgaaaaccctacttaactatctttaatt |
394 |
Q |
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| T |
743523 |
gacgagataatcatatatataatatttgtgaacttaaaaacacaaactaaatatgcctaaatattaatccggtgaaaaccctacttaactatctttaatt |
743622 |
T |
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| Q |
395 |
tgttttaaggaaaccctacttaact |
419 |
Q |
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| T |
743623 |
tgttttaaggaaaccctacttaact |
743647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 42450594 - 42450751
Alignment:
| Q |
101 |
atacttacatctgcaagacgaactttgctagcgttgtcgtcttttttccccaaagaaagaagttcaacttccagtttcactctcttccttaaaataaatt |
200 |
Q |
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| T |
42450594 |
atacttacatctgcaagacgagctttgctagcgttgtcatcttttctcgccaaagaaagaagttccacttccagtttcactctcttcctcaaaataagtt |
42450693 |
T |
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| Q |
201 |
caatatcctttggctgactatcaaattgaactcttaacaacagtaggattcatctttta |
259 |
Q |
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| T |
42450694 |
caatatcctttggctgaccatcaaattgaactc-taacaccagcagggttcatctttta |
42450751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 42450875 - 42450939
Alignment:
| Q |
350 |
cctaaatattaatccggtgaaaaccctacttaactatctttaatttgttttaaggaaaccctacttaact |
419 |
Q |
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| T |
42450875 |
cctaaatattaatccgatgaaaaccctacttaactatc-----tttgttttaaggaaaccctacttaact |
42450939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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