View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7095_high_1 (Length: 250)
Name: NF7095_high_1
Description: NF7095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7095_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 52272441 - 52272202
Alignment:
| Q |
1 |
catttattcagctgctttcttaaaaatgtagattttgttcatcaagtgcttatttgtctttgatttctaggatctcttttctgattctgaaataaatgat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272441 |
catttattcagacgctttcttaaaaatgtagattttgttcaccaagtgcttatttgtctttgatttctaggatctcttttctgattctgaaataaatgat |
52272342 |
T |
|
| Q |
101 |
attaaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgccccatctatgctttcaatgaacttgaaacttgattctgctcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272341 |
attaaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgccccatctatgctttcaatgaacttgaaacttgattctgctcctg |
52272242 |
T |
|
| Q |
201 |
ttgatgatgatatgtaagtttttagatgtttcttcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272241 |
ttgatgatgatatgtaagtttttagatgtttcttcctttg |
52272202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University