View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7095_low_1 (Length: 356)
Name: NF7095_low_1
Description: NF7095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7095_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 55622705 - 55622374
Alignment:
| Q |
18 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
117 |
Q |
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| T |
55622705 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
55622606 |
T |
|
| Q |
118 |
tacatttgaagcaaggcccttgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaat |
214 |
Q |
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| T |
55622605 |
tacatttgaagcaagacccttgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaat |
55622506 |
T |
|
| Q |
215 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttccta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55622505 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttccta |
55622406 |
T |
|
| Q |
315 |
gagctgtgttaaggggtaatttttgccctttg |
346 |
Q |
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| T |
55622405 |
gagctgtgttaaggggtaatttttgccttttg |
55622374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 55630009 - 55629678
Alignment:
| Q |
18 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
117 |
Q |
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| T |
55630009 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
55629910 |
T |
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| Q |
118 |
tacatttgaagcaaggcccttgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaat |
214 |
Q |
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| T |
55629909 |
tacatttgaagcaagacccttgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaat |
55629810 |
T |
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| Q |
215 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttccta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55629809 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttccta |
55629710 |
T |
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| Q |
315 |
gagctgtgttaaggggtaatttttgccctttg |
346 |
Q |
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| T |
55629709 |
gagctgtgttaaggggtaatttttgccttttg |
55629678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 55615401 - 55615086
Alignment:
| Q |
18 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55615401 |
atatgcatgtacctccatggagaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccat |
55615302 |
T |
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| Q |
118 |
tacatttgaagcaaggcccttgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaat |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55615301 |
tacatttgaagcaagacccttgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaat |
55615202 |
T |
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| Q |
215 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttccta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
55615201 |
gttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgtttctgcacagttttccta |
55615102 |
T |
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| Q |
315 |
gagctgtgttaagggg |
330 |
Q |
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| | ||||||| |||| |
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| T |
55615101 |
gtgatgtgttatgggg |
55615086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 171 - 330
Target Start/End: Original strand, 16480128 - 16480287
Alignment:
| Q |
171 |
gtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16480128 |
gtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaa |
16480227 |
T |
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| Q |
271 |
ccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaagggg |
330 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| |
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| T |
16480228 |
ccccttagcacagggcacagaggtgtttctgcacagttttcctagtgatgtgttatgggg |
16480287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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