View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7095_low_2 (Length: 278)
Name: NF7095_low_2
Description: NF7095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7095_low_2 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 3764 - 4015
Alignment:
| Q |
11 |
cataggtgaactgcaaattcaagcaaaagagtaaatattacagggaaaaatagtaaaagtatatgcacccatattcaaccacggaaggagattcccttcg |
110 |
Q |
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| T |
3764 |
cataggtgaactgcaaattcaagcaaaagagtaaatagtacagggaaaaatagtaaaagtatatgcacccatattcaaccacggaaggagattcccttcg |
3863 |
T |
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| Q |
111 |
ttagctttctgatttaccaacttacagtttcaaatttcatttgtctggtcttaacattttcttcacatatttttcctttgcataaagttttttaacaatt |
210 |
Q |
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| T |
3864 |
ttagctgtctgatttaccaacttacagtttcaaatttcatttgtctggtcctaacattttcttcacatatttttcctttgcataaagttttttaacaatt |
3963 |
T |
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| Q |
211 |
aagatcacatatttttagaggtaacactgcattatacatttacccagatata |
262 |
Q |
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| T |
3964 |
aagatcacatatttttagaggtaacactgcattatacatttacccagatata |
4015 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 16865306 - 16865269
Alignment:
| Q |
11 |
cataggtgaactgcaaattcaagcaaaagagtaaatat |
48 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| |
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| T |
16865306 |
cataagtgaactacaaattcaagcaaaagagtaaatat |
16865269 |
T |
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