View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7095_low_3 (Length: 250)
Name: NF7095_low_3
Description: NF7095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7095_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8184040 - 8184278
Alignment:
| Q |
1 |
ctgatgcaacattagtaagaagtgctctagctgacagactctcaacccttgttcaaaacatagctctcaccgtaacagcatttgttattgccttcacatt |
100 |
Q |
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| T |
8184040 |
ctgatgcaacattagtaagaagtgctctagctgacagactctcaacccttgttcaaaacatagctctcaccgtaacagcatttgttattgccttcacaat |
8184139 |
T |
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| Q |
101 |
gagttggaaactaacattagttgttgcagcttgccttccctttctcataggagcttacatcacagaggttaatctcataataaaaccacttcactaatga |
200 |
Q |
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| T |
8184140 |
gagttggaaactaacattagttgttgcagcttgccttccctttctcataggagcttacatcacagaggttaatctcataataaaaccacttcactaatga |
8184239 |
T |
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| Q |
201 |
tttgttcattcatacttctatctatggtgcattattcat |
239 |
Q |
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| T |
8184240 |
tttgttcattcatacttctatctatggtgcattattcat |
8184278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 49217353 - 49217488
Alignment:
| Q |
66 |
ctcaccgtaacagcatttgttattgccttcacattgagttggaaactaacattagttgttgcagcttgccttccctttctcataggagcttacatcacag |
165 |
Q |
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|||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
49217353 |
ctcaccgtaacaatatttgttattggcttcgcattgagttggaaactaacattagtggttgcagcttgccttccccttctcagaggagcttccatcacaa |
49217452 |
T |
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| Q |
166 |
aggttaatctcataataaaaccacttcactaatgat |
201 |
Q |
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| T |
49217453 |
aggttaatctcataataaaaccacttcactaatgat |
49217488 |
T |
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