View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7096_low_1 (Length: 605)
Name: NF7096_low_1
Description: NF7096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7096_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Original strand, 10765475 - 10766046
Alignment:
| Q |
13 |
tttggtgttatagatgctacttggcataagcttagataccctaattttactgacaagtttcaacttttgcaaagaaagaatcaaggtgagcattcatact |
112 |
Q |
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| T |
10765475 |
tttggtgttgtagatgctacttggcataagcttagataccctaattttactgacaagtttcaacttttgcaaagaaagaatcaaggtgagcattcatact |
10765574 |
T |
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| Q |
113 |
attcataatacatgattaatttatccacactttctatgcggcagcggctctatctatcttttatataggaaaataaatccttcatactcaccggcttcca |
212 |
Q |
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| T |
10765575 |
attcataatacatgattaatttatccacactttctatgcggcagcggctctatctatcttttatataggaaaataaatccttcatactcaccggcttcca |
10765674 |
T |
|
| Q |
213 |
cccacctctgctgagcataggtcccatccagggttttaaatagagtatgcgataagggttgcaattaaattacgtcaccatctttgatattgcgaagaat |
312 |
Q |
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| T |
10765675 |
cccacctctgctgagcataggtcccatccagggttttaaatagagtctgcgataagggttgcaatt-----acgtcaccatctttgatattgcgaagaat |
10765769 |
T |
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| Q |
313 |
cgcagtcaaatgtggccgatgattccttaatcgcagttgcgctgcagtttaagaaatatcgaaaaccattttattgcatttgtgacgtagatcacagccg |
412 |
Q |
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| T |
10765770 |
cgcagtcaaatgtggccgatgattccttaatcgcagttgtgctgcagtttaagaaatatcgaaaaccattttattgcatttgtgacttagatcacagccg |
10765869 |
T |
|
| Q |
413 |
cagacctttatttgaaaccccggtcccatctgctagtgtgaattattatagaagcaattttgcagtgttgtcaatcgcggaatacaataaatagcgattt |
512 |
Q |
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| T |
10765870 |
cagacctttatttgaaaccctggtcccatctgctaggttgaattattatagaagcaattttgcagtgttgtcaatcgcggaatacaataaatagcgattt |
10765969 |
T |
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| Q |
513 |
gttcaaattccgttatgctaaagtgttatagctgctgtataacaacatcttgtacc--aaatagcatactgcggaac |
587 |
Q |
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| T |
10765970 |
gttcaaattccgttatgctaaagtgttatagctgctgtataacaacatcttgtaccaaaaatagcatactgcggaac |
10766046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 38325752 - 38325840
Alignment:
| Q |
13 |
tttggtgttatagatgctacttggcataagcttagataccctaattttactgacaagtttcaacttttgcaaagaaagaatcaaggtga |
101 |
Q |
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| T |
38325752 |
tttggtgtagtagatgctacttggcacaagcttagataccctaatttcgcggacaagtttcaacttttgcaaaggaagaatcaaggtga |
38325840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 26275481 - 26275523
Alignment:
| Q |
501 |
aaatagcgatttgttcaaattccgttatgctaaagtgttatag |
543 |
Q |
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| T |
26275481 |
aaatagcgatttgttcaaattccgctatgcaaaagtgttatag |
26275523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 537
Target Start/End: Original strand, 1912548 - 1912583
Alignment:
| Q |
502 |
aatagcgatttgttcaaattccgttatgctaaagtg |
537 |
Q |
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| T |
1912548 |
aatagcgatttgttcaaatttcgttatgctaaagtg |
1912583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 548
Target Start/End: Original strand, 30876586 - 30876658
Alignment:
| Q |
476 |
agtgttgtcaatcgcggaatacaataaatagcgatttgttcaaattccgttatgctaaagtgttatagctgct |
548 |
Q |
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| T |
30876586 |
agtgttgtcaatcgcagatcacagaaaatagcgatttattcaaattacgctatgctacaatgctatagctgct |
30876658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 3950807 - 3950750
Alignment:
| Q |
473 |
tgcagtgttgtcaatcgcggaatacaataaatagcgatttgttcaaattccgttatgc |
530 |
Q |
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| T |
3950807 |
tgcagtgttgtcgattgcggatcacaaaaaatagcggtttgctcaaattccgttatgc |
3950750 |
T |
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