View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7098_high_1 (Length: 401)
Name: NF7098_high_1
Description: NF7098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7098_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 41610032 - 41610414
Alignment:
| Q |
19 |
cactttagtgtaattggtcatcgtgaggaactacatgtttcaatacgagctttttagcgtcttcttagttcattattgttttgcttagtagtataaagat |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41610032 |
cactttagtgcaattggtcatcgtgaggaactacatgtttcaatacgagctttttagcgtcttcttagttcattattgttttgcttagtagtataaagat |
41610131 |
T |
|
| Q |
119 |
agtgagaagagatcaagacagagtgcgagaagagagagtcgtagttaattttgaaaatgacaagagtgcctttaaact--agnnnnnnntataatatata |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
41610132 |
agtgagaagagatcaagac--agtgcgagaagagagagtcgtagttaattttgaaaatgacaagagtgcctttaaactaaaaaaaaatatataatatata |
41610229 |
T |
|
| Q |
217 |
atttgatagtaatttttaatagaactattattaagtcaatcaaaatgctaacaatgcaacaacgaagacagaccattgttac----taaaaattgatatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
41610230 |
atttgatagtaatttttaatagaactattattaagtcaatcaaaatgctaacaatgcaacaacgaagacagaccatttttacaaaaaaaaaattgatatt |
41610329 |
T |
|
| Q |
313 |
taaacaatcatttttaagcaacttttatgacaactcactcttatatttttattgtaattttattctcattcttttcttctctctc |
397 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41610330 |
tgaacaatcatttctaagcaacttttatgataactcacttttatatttttattgtaattttattctcattcttttcttttctctc |
41610414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 5456915 - 5456842
Alignment:
| Q |
306 |
tgatatttaaacaatcatttttaagcaacttttatgacaactcactcttatatttttattgtaattttattctc |
379 |
Q |
| |
|
|||||||| |||| |||||||| | |||||||| ||||||||| |||| ||||||||||| || |||||||||| |
|
|
| T |
5456915 |
tgatatttgaacattcattttttaacaacttttgtgacaactctctctcatatttttattatacttttattctc |
5456842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 10729590 - 10729647
Alignment:
| Q |
322 |
atttttaagcaacttttatgacaactcactcttatatttttattgtaattttattctc |
379 |
Q |
| |
|
|||||| | |||||||| |||||||||||||| ||| ||| |||||| |||||||||| |
|
|
| T |
10729590 |
attttttaacaacttttgtgacaactcactctcatactttcattgtatttttattctc |
10729647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 5466399 - 5466325
Alignment:
| Q |
306 |
tgatatttaaacaatcatttttaagcaacttttatgacaactcactct--tatatttttattgtaattttattctc |
379 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
5466399 |
tgatatttaaacaatcatttttaa-caactttgatgataactctctctcacatatttttattgtacttttattctc |
5466325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 1069135 - 1069197
Alignment:
| Q |
303 |
aattgatatttaaacaatcatttttaagcaacttttatgacaactcactcttatatttttatt |
365 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||| || |||| ||||||||||| |
|
|
| T |
1069135 |
aattgatatttaaataaccatttttaaataacttttatgacaattctctctgatatttttatt |
1069197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 7438574 - 7438621
Alignment:
| Q |
306 |
tgatatttaaacaatcatttttaagcaacttttatgacaactcactct |
353 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
7438574 |
tgatatttgaacaaccatttttaaacaacttttatgacaactctctct |
7438621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 10008576 - 10008503
Alignment:
| Q |
306 |
tgatatttaaacaatcatttttaagcaacttttatgacaactcactcttatatttttattgtaattttattctc |
379 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||||||||| |||| ||| | | |||||| ||||| |||| |
|
|
| T |
10008576 |
tgatattcgaacaatcatttttaaacaacttttgtgacaactctctctcatactctcattgtacttttactctc |
10008503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 31178544 - 31178617
Alignment:
| Q |
306 |
tgatatttaaacaatcatttttaagcaacttttatgacaactcactcttatatttttattgtaattttattctc |
379 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||| ||||| | | |||||||||||||| |||||||||| |
|
|
| T |
31178544 |
tgatatttaaacaatcatttttaaatgatttttgtgataactctttttgatatttttattgtacttttattctc |
31178617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University