View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7098_high_7 (Length: 255)
Name: NF7098_high_7
Description: NF7098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7098_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 14514307 - 14514227
Alignment:
| Q |
3 |
ttttgccaccttaatttttacactctcatatcgttcttaattaaggaatgaaagttcaataatttcttagatataattttt |
83 |
Q |
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| T |
14514307 |
ttttgccaccttaatttttacactctcatatcgttcttaattaatgaatgaaagttcaataattttttagatataattttt |
14514227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 14513787 - 14513732
Alignment:
| Q |
110 |
ctatttttccagagttatatgaaaagtagaagaatcttgttttgaggaggaggaga |
165 |
Q |
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| T |
14513787 |
ctatttttccagagttatatgaaaagtagaagcatcttgttttgaggaggtggaga |
14513732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 14513692 - 14513658
Alignment:
| Q |
205 |
ggaggaagataatagtacccaagtgagagaagggt |
239 |
Q |
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| T |
14513692 |
ggaggaagataatagtacccaagtgagaaaagggt |
14513658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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