View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7098_low_5 (Length: 275)
Name: NF7098_low_5
Description: NF7098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7098_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4583194 - 4583453
Alignment:
| Q |
1 |
ggtaaggaggaatacagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatatt |
100 |
Q |
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| T |
4583194 |
ggtaaggaggaatacagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatatt |
4583293 |
T |
|
| Q |
101 |
agagaaaaagtggaaagaggaagatatacaagtccatatgaatacatcaagtaaaccccttctacaagtaaaccaaaacctaagtatagggcnnnnnnnt |
200 |
Q |
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| T |
4583294 |
agagaaaaagtggaaagaggaagatatacaagcccatatgaatacatcaagtaaaccccttctacaagtaaaccaaaacctaagtatagggcaaaaaaat |
4583393 |
T |
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| Q |
201 |
ttggtctgattatggaggaattatcattgctgaacatgtttgtgaattgatcatgtggtt |
260 |
Q |
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| T |
4583394 |
ttggtttgattatggaggaattatcattgctgaacatgtttttgaattgatcatgtggtt |
4583453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 40838898 - 40838761
Alignment:
| Q |
13 |
tacagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatattagagaaaaagtg |
112 |
Q |
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| T |
40838898 |
tacagaattgaatatgaatgctgtgaacttttgggaattaaggaaataagaaaatactgcattgaaggctaattgtgttgcacatagtaaagaataggtg |
40838799 |
T |
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| Q |
113 |
gaaagaggaagatatacaagtccatatgaatacatcaa |
150 |
Q |
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| T |
40838798 |
gaaagtgaaagatatagaagtccattggaatacatcaa |
40838761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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