View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7098_low_6 (Length: 273)
Name: NF7098_low_6
Description: NF7098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7098_low_6 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 24539433 - 24539293
Alignment:
| Q |
133 |
tggccggtgaagtaactatgtttgatttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaagtgatgatctttacatgc |
232 |
Q |
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| T |
24539433 |
tggccggtgaagtaactatgtttgatttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaagtgatgatctttacatgc |
24539334 |
T |
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| Q |
233 |
ttactgatattgttggaaaagcttcgagattttgtgccact |
273 |
Q |
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| T |
24539333 |
ttactgatattgttggaaaagcttcgagattttgtgccact |
24539293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 26035162 - 26035219
Alignment:
| Q |
158 |
tttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaag |
215 |
Q |
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| T |
26035162 |
tttatgattttgatctttgcaagagttgaaatttgctaaattattaaggttgagaaag |
26035219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 14734174 - 14734304
Alignment:
| Q |
13 |
agttataattgatggctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaacaataag |
112 |
Q |
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| T |
14734174 |
agttataattgatgtctgagagctgaataggacctaggaggaacgaagcgtgtgatggagatgaactaggaagtaagaactcgtagtgactaatagtaag |
14734273 |
T |
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| Q |
113 |
aatctaattgtgccaaaaggtggccggtgaa |
143 |
Q |
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| T |
14734274 |
aatctactcattccaaaaggtggccggtgaa |
14734304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 15594788 - 15594837
Alignment:
| Q |
10 |
gacagttataattgatggctgagagctgaataggacctaggaggaacgaa |
59 |
Q |
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| T |
15594788 |
gacagttagaaaagatgtctgagagctgaatatgacctaggaggaacgaa |
15594837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 21339592 - 21339725
Alignment:
| Q |
7 |
cacgacagttataattgatggctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaac |
106 |
Q |
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| T |
21339592 |
cacgacagttagaacggatgcctgagagctgaatagaacctaggaggaacaaattatgtgatggagat--actcagaagtatgaactcggagcaagtgac |
21339689 |
T |
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| Q |
107 |
aataagaatctaattgtgccaaaaggtggccggtga |
142 |
Q |
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| T |
21339690 |
agtaaggatccactcactccaaaaggtggccggtga |
21339725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 21889548 - 21889668
Alignment:
| Q |
23 |
gatggctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaacaataagaatctaattg |
122 |
Q |
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| T |
21889548 |
gatgcctgagatttgaataggacccaagaggaacgaattaagtgttggagatgaactagaaggtaggagctcggagcaagtaatggtaagaatttaatcg |
21889647 |
T |
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| Q |
123 |
tgccaaaaggtggccggtgaa |
143 |
Q |
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| T |
21889648 |
tgccagaaggtggccgatgaa |
21889668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 21453 - 21376
Alignment:
| Q |
28 |
ctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaa |
105 |
Q |
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| T |
21453 |
ctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagtaaggactcagagcaagtaa |
21376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 14818258 - 14818335
Alignment:
| Q |
28 |
ctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaa |
105 |
Q |
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| T |
14818258 |
ctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagtaaggactcagagcaagtaa |
14818335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 14284094 - 14284150
Alignment:
| Q |
23 |
gatggctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaact |
79 |
Q |
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| T |
14284094 |
gatgcctgagagctgaatcggacctaggaggaacgaagtatgtgatggagatgaact |
14284150 |
T |
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