View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7098_low_9 (Length: 244)

Name: NF7098_low_9
Description: NF7098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7098_low_9
NF7098_low_9
[»] chr6 (11 HSPs)
chr6 (23-225)||(20770495-20770697)
chr6 (30-227)||(6921371-6921568)
chr6 (34-227)||(6947901-6948094)
chr6 (177-227)||(6954540-6954590)
chr6 (11-104)||(6943098-6943191)
chr6 (11-227)||(6935239-6935455)
chr6 (180-228)||(19746714-19746762)
chr6 (178-217)||(6942998-6943037)
chr6 (189-227)||(17369675-17369713)
chr6 (31-104)||(6954663-6954736)
chr6 (180-212)||(34861907-34861939)
[»] chr4 (11 HSPs)
chr4 (11-227)||(53774685-53774889)
chr4 (140-227)||(11971003-11971090)
chr4 (140-227)||(11981704-11981791)
chr4 (178-227)||(3557726-3557775)
chr4 (178-227)||(3565744-3565793)
chr4 (135-212)||(10482138-10482215)
chr4 (178-212)||(10468042-10468076)
chr4 (135-210)||(10475164-10475239)
chr4 (175-225)||(35767015-35767065)
chr4 (177-225)||(837775-837823)
chr4 (135-208)||(6388197-6388270)
[»] chr5 (5 HSPs)
chr5 (27-227)||(18964851-18965054)
chr5 (175-215)||(29597585-29597625)
chr5 (180-227)||(23086784-23086831)
chr5 (178-227)||(24330920-24330969)
chr5 (175-215)||(29647673-29647713)
[»] chr7 (33 HSPs)
chr7 (11-227)||(1985976-1986192)
chr7 (131-227)||(19604484-19604580)
chr7 (27-101)||(14076544-14076618)
chr7 (27-101)||(14386572-14386646)
chr7 (140-227)||(22070073-22070160)
chr7 (140-227)||(22080830-22080917)
chr7 (175-227)||(14076675-14076727)
chr7 (175-227)||(14386703-14386755)
chr7 (175-227)||(20352092-20352144)
chr7 (175-227)||(22063639-22063691)
chr7 (148-227)||(22100463-22100542)
chr7 (179-227)||(660868-660916)
chr7 (123-220)||(13416939-13417036)
chr7 (122-227)||(19597676-19597781)
chr7 (178-225)||(9807824-9807871)
chr7 (178-225)||(19637240-19637287)
chr7 (18-100)||(13417071-13417153)
chr7 (175-225)||(20374526-20374576)
chr7 (186-227)||(19645651-19645692)
chr7 (178-227)||(29899374-29899423)
chr7 (150-227)||(18952926-18953003)
chr7 (175-215)||(19344608-19344648)
chr7 (175-227)||(20338921-20338973)
chr7 (180-227)||(6864828-6864875)
chr7 (177-227)||(19351090-19351140)
chr7 (177-227)||(22028627-22028677)
chr7 (124-161)||(22021338-22021375)
chr7 (124-161)||(22037032-22037069)
chr7 (178-227)||(29106814-29106863)
chr7 (178-227)||(36263053-36263102)
chr7 (176-220)||(20058085-20058129)
chr7 (187-215)||(20140851-20140879)
chr7 (180-228)||(23999475-23999523)
[»] scaffold0867 (1 HSPs)
scaffold0867 (148-227)||(4690-4769)
[»] chr2 (8 HSPs)
chr2 (176-217)||(20975556-20975597)
chr2 (130-227)||(18920786-18920883)
chr2 (178-227)||(25698507-25698556)
chr2 (130-227)||(18908830-18908927)
chr2 (177-227)||(18913578-18913628)
chr2 (185-227)||(21021290-21021332)
chr2 (178-227)||(20967700-20967749)
chr2 (178-227)||(20980604-20980653)
[»] chr1 (4 HSPs)
chr1 (175-225)||(50645508-50645558)
chr1 (178-227)||(4570927-4570976)
chr1 (178-227)||(39379082-39379131)
chr1 (178-227)||(21855404-21855453)
[»] chr3 (3 HSPs)
chr3 (184-227)||(3625740-3625783)
chr3 (177-225)||(25901302-25901350)
chr3 (177-225)||(25915320-25915368)
[»] scaffold0354 (1 HSPs)
scaffold0354 (186-220)||(7471-7505)
[»] chr8 (2 HSPs)
chr8 (148-227)||(27618461-27618540)
chr8 (180-217)||(29390288-29390325)
[»] scaffold0649 (1 HSPs)
scaffold0649 (178-227)||(5438-5487)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 20770495 - 20770697
Alignment:
Q  23 aatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcga 122  Q
    |||| ||||||||||||| ||||  ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20770495 aatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaa 20770594  T
Q  123 actctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcat 222  Q
    |||||||||||||||||||||||||||||||||||||||||| ||       || |||||||||||||||||||||||||||||||| ||||||||||||    
T  20770595 actctttgtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcat 20770694  T
Q  223 gga 225  Q
    |||    
T  20770695 gga 20770697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 6921568 - 6921371
Alignment:
Q  30 caatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactcttt 129  Q
    ||||||||||| ||||  |||||||||| | |||||||||| ||||| ||||| ||||||| |||||||||||||   | || | ||  || ||||||||    
T  6921568 caatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactcttt 6921469  T
Q  130 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
     ||| |||||||||||  | | ||||||| |||||| |       | ||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  6921468 ctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggact 6921371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 6948094 - 6947901
Alignment:
Q  34 ttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactctttgtgt 133  Q
    ||||||| ||||  |||||||||| | |||||| ||| |||| |||||| ||||||| |||||||||||||   | || ||||  || |||||||| |||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgt 6947995  T
Q  134 gttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||  |||||||||| ||||||||        | || |||||| | ||||||||||||||||||||||||||||| || ||||||    
T  6947994 gttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggact 6947901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6954590 - 6954540
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  6954590 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggact 6954540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 6943191 - 6943098
Alignment:
Q  11 gaagaatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaa 104  Q
    ||||||| ||||| | || ||||| ||||| ||||  |||||||||| | |||||||||| ||| | ||||| |||||||||||||||||||||    
T  6943191 gaagaatcttacagttgaacaattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaa 6943098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 6935455 - 6935239
Alignment:
Q  11 gaagaatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttcca 110  Q
    ||||||| ||||| |||| ||||| ||||| ||||  |||||||||| | |||||||||  ||| | ||||| ||||||| |||||||||||||   | |    
T  6935455 gaagaatcttacagtcgaacaattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagcta 6935356  T
Q  111 cttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggag 210  Q
    | ||    ||  ||||||| ||  |||||||||||  | | ||||||| ||||||||       | |||| |||||| ||||||||||||||||||||||    
T  6935355 catggctttcctactctttctggattgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggag 6935256  T
Q  211 ttgaagagtcatggact 227  Q
    || |||| || ||||||    
T  6935255 ttcaagaatcttggact 6935239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 19746762 - 19746714
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagttgaagagtcatggactt 228  Q
    ||||||||||||||||||||| | ||||||||| ||||||| |||||||    
T  19746762 tttgttatatggcaaatgaagaagtttggagttcaagagtcttggactt 19746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 6943037 - 6942998
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaaga 217  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  6943037 attttgttatttagcaaatgaaggaatttggagttgaaga 6942998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 17369675 - 17369713
Alignment:
Q  189 tggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggact 17369713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 6954736 - 6954663
Alignment:
Q  31 aatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaa 104  Q
    |||||||||| ||||  |||||| ||  | |||||||||| ||||||||||| ||||| | |||||||||||||    
T  6954736 aatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaa 6954663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 34861939 - 34861907
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagtt 212  Q
    ||||||||||||||||||||||| |||||||||    
T  34861939 tttgttatatggcaaatgaaggagtttggagtt 34861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 53774685 - 53774889
Alignment:
Q  11 gaagaatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttcca 110  Q
    ||||||| |||||| ||| |||||||||||||| | ||||||||||| | |||||||||| |||||||||  ||||||| |||            | |||    
T  53774685 gaagaatcttacaaccgaacaatttgtgattatttcgcttgatttggagacagagacatatacacagttgcaactccctaaat------------tgcca 53774772  T
Q  111 cttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggag 210  Q
     ||||||||| || | |||||| ||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||    
T  53774773 tttgataatccaaatatttgtgcgttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggag 53774872  T
Q  211 ttgaagagtcatggact 227  Q
    |||||||||| ||||||    
T  53774873 ttgaagagtcttggact 53774889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 11971090 - 11971003
Alignment:
Q  140 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  11971090 ggattgtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggact 11971003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 11981791 - 11981704
Alignment:
Q  140 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  11981791 ggattgtctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggact 11981704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 3557726 - 3557775
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||| |||||||||| |||||||||||||| ||||||||||| ||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggact 3557775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 3565744 - 3565793
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||| |||||||||| |||||||||||||| ||||||||||| ||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggact 3565793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 10482138 - 10482215
Alignment:
Q  135 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagtt 212  Q
    |||||||||||| ||||||||  |||||||| |       || ||||||||||||||||||||||||| |||||||||    
T  10482138 ttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagtt 10482215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 10468042 - 10468076
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagtt 212  Q
    ||||||||||||||||||||||||| |||||||||    
T  10468042 attttgttatatggcaaatgaaggattttggagtt 10468076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  135 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggag 210  Q
    |||||||||||| ||||||||| | |||||||        | |||||||||||||||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 35767015 - 35767065
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    ||||||||||||||||| | ||| | |||||||||||||||||||| ||||    
T  35767015 ctcattttgttatatggaagatggaagaatttggagttgaagagtcttgga 35767065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 837775 - 837823
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    |||||||||||||||||||||||| | ||||| ||| ||||||| ||||    
T  837775 cattttgttatatggcaaatgaagaattttggtgttcaagagtcttgga 837823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 6388197 - 6388270
Alignment:
Q  135 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttgg 208  Q
    |||||||  ||| ||||||||| ||||||||||       |||||| ||||||||||||||||||||| |||||    
T  6388197 ttgatgggctgtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaaatgaaggattttgg 6388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 18965054 - 18964851
Alignment:
Q  27 gagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccac---ttgataatcgaa 123  Q
    |||||||||||||||||||  |||||| ||| |   |||||||  ||||||||||||||||||| |||||||||||| || | ||   |||||| ||  |    
T  18965054 gagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccga 18964955  T
Q  124 ctctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatg 223  Q
    | |||||||| |||||| ||||  |||||||| |||||||| ||       |||||||  |||||||||||||||||||||||||||||||||| || ||    
T  18964954 ccctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactcttg 18964855  T
Q  224 gact 227  Q
    ||||    
T  18964854 gact 18964851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 29597625 - 29597585
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaa 215  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  29597625 ctcattttgttatatggcaaatgattgaatttggagttgaa 29597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23086784 - 23086831
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||| |||||||| ||||||||| ||||||| ||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggact 23086831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 24330969 - 24330920
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||| | |||||||||||||| |||||||| || ||||||    
T  24330969 attttgttatatgggagatgaaggaatttggggttgaagattcttggact 24330920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 29647673 - 29647713
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaa 215  Q
    ||||||||||||||||||||||||  ||||||||| |||||    
T  29647673 ctcattttgttatatggcaaatgatagaatttggatttgaa 29647713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 1986192 - 1985976
Alignment:
Q  11 gaagaatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttcca 110  Q
    ||||||| ||||| | || ||| |||| |||||||  |||||||||| | |||||| ||| ||||||||||| ||||||| || ||||||||||  || |    
T  1986192 gaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctccctcgatattgtgatgaagatcta 1986093  T
Q  111 cttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggag 210  Q
    | || |  || |||||||| |||||||||||||||  | | ||||||| |||||||        | ||||||||| | |||||||||||||||||||| |    
T  1986092 catggtgttccaactctttctgtgttgatggattgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcg 1985993  T
Q  211 ttgaagagtcatggact 227  Q
    ||||||| || ||||||    
T  1985992 ttgaagaatcttggact 1985976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 19604580 - 19604484
Alignment:
Q  131 tgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||| |  |||||||||||||||||||||       |||| ||| |||||||||| ||||||||||||||||||||||| || ||||||    
T  19604580 tgtgttgatggactccatttgtttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggact 19604484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 14076544 - 14076618
Alignment:
Q  27 gagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgat 101  Q
    |||||||||||||||||||  |||||||||| | | |||||||| ||||| ||||||||||||| ||||||||||    
T  14076544 gagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 14386572 - 14386646
Alignment:
Q  27 gagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgat 101  Q
    |||||||||||||||||||  |||||||||| | | |||||||| ||||| ||||||||||||| ||||||||||    
T  14386572 gagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 22070073 - 22070160
Alignment:
Q  140 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  22070073 ggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 22080830 - 22080917
Alignment:
Q  140 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  22080830 ggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22080917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 14076675 - 14076727
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  14076675 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggact 14076727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 14386703 - 14386755
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  14386703 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggact 14386755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 20352092 - 20352144
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  20352092 ctcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggact 20352144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 22063639 - 22063691
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  22063639 ctcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggact 22063691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 22100463 - 22100542
Alignment:
Q  148 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  22100463 tttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggact 22100542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 660916 - 660868
Alignment:
Q  179 ttttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggact 660868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 13417036 - 13416939
Alignment:
Q  123 actctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtc 220  Q
    ||||||| | ||||||  |||||| ||||||||||| ||||||||       |  ||||| | |||||||||||||||||||||||||||||||||||    
T  13417036 actctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagagtc 13416939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 19597781 - 19597676
Alignment:
Q  122 aactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtca 221  Q
    |||||||  ||| ||||||||||   ||||||||| ||||||||||       || ||||| | |||||||| ||||||||||||| |||||||||||||    
T  19597781 aactcttgttgttttgatggattccctttgtttttgtcatgattttcatggaactgattttatcatatggcagatgaaggaatttgaagttgaagagtca 19597682  T
Q  222 tggact 227  Q
    ||||||    
T  19597681 tggact 19597676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 9807824 - 9807871
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  9807824 atttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 19637287 - 19637240
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaagagtcgtgga 19637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 13417153 - 13417071
Alignment:
Q  18 attacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtga 100  Q
    |||||||| || |||||||||||||||| | |||| |||| | | |||||||| ||||||||||| || |||| |||||||||    
T  13417153 attacaattgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtga 13417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 20374576 - 20374526
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    |||||||||| |||||| ||||||||||||||||||||| ||| |||||||    
T  20374576 ctcattttgtaatatgggaaatgaaggaatttggagttggagattcatgga 20374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 19645692 - 19645651
Alignment:
Q  186 atatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  19645692 atatggcagatgaaggaatttggaattgaagagtcatggact 19645651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 29899374 - 29899423
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||||| |||||| ||||||| ||||||||||| ||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggact 29899423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 18953003 - 18952926
Alignment:
Q  150 tgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||       | |||||| | |||||||| ||||||||||||||||||||  |||||||||||    
T  18953003 tgtttttctcatgattttcatgggacccattttatcatatggcagatgaaggaatttggagttgacaagtcatggact 18952926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 19344648 - 19344608
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaa 215  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  19344648 ctcattttgttatatggcagatgatggaatttggagttgaa 19344608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 20338921 - 20338973
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| || ||||||    
T  20338921 ctcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggact 20338973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 6864875 - 6864828
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  6864875 tttgtaatatggttaatgaaggaatttggagttgaagagtcttggact 6864828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 19351140 - 19351090
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||| ||||||| |||| ||||||||||||||| ||||| ||||||    
T  19351140 cattttgttttatggcagatgatggaatttggagttgaggagtcttggact 19351090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 22028627 - 22028677
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||| |||||| ||| | ||||||||||||||| ||||||    
T  22028627 cattttgttatatggaaaatgacggattatggagttgaagagtcttggact 22028677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 22021338 - 22021375
Alignment:
Q  124 ctctttgtgtgttgatggattgtatttgtttttctcat 161  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  22021338 ctctatgtgtgttgatggattgcatttgtttttctcat 22021375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 22037032 - 22037069
Alignment:
Q  124 ctctttgtgtgttgatggattgtatttgtttttctcat 161  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  22037032 ctctatgtgtgttgatggattgcatttgtttttctcat 22037069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 29106814 - 29106863
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||| ||||||| |||||| ||||||| ||||||||||| ||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggact 29106863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 36263053 - 36263102
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||| | ||| | |||||||||||||||||||| ||||||    
T  36263053 attttgttatatggaagatggaagaatttggagttgaagagtcttggact 36263102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 20058129 - 20058085
Alignment:
Q  176 tcattttgttatatggcaaatgaaggaatttggagttgaagagtc 220  Q
    |||||||||||||||| ||||| |||||||  |||||||||||||    
T  20058129 tcattttgttatatggaaaatggaggaattcagagttgaagagtc 20058085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 20140879 - 20140851
Alignment:
Q  187 tatggcaaatgaaggaatttggagttgaa 215  Q
    |||||||||||||||||||||||||||||    
T  20140879 tatggcaaatgaaggaatttggagttgaa 20140851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 23999523 - 23999475
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagttgaagagtcatggactt 228  Q
    |||||||||||| |||||||||| ||||||||| || |||| |||||||    
T  23999523 tttgttatatggaaaatgaaggagtttggagttcaaaagtcgtggactt 23999475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 4769 - 4690
Alignment:
Q  148 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  4769 tttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggact 4690  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 20975556 - 20975597
Alignment:
Q  176 tcattttgttatatggcaaatgaaggaatttggagttgaaga 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  20975556 tcattttgttatatggcaaatgagggaatttggagttgaaga 20975597  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 18920883 - 18920786
Alignment:
Q  130 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||| |||||||||||   ||||       | ||||||||||||||| | |||| ||||||||||||| ||||||| ||||||    
T  18920883 gtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggact 18920786  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 25698507 - 25698556
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||||||||||  ||||||||||||||||| || ||||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggact 25698556  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 18908927 - 18908830
Alignment:
Q  130 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||| | |||||||||||   ||||       | ||||||||||||||| | |||| ||||||||||||| ||||||| ||||||    
T  18908927 gtgtgttgatggattgtctatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggact 18908830  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18913628 - 18913578
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||| | |||| ||||||||||||| ||||||| ||||||    
T  18913628 cattttgttatatggaagatgatggaatttggagttcaagagtcttggact 18913578  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 21021332 - 21021290
Alignment:
Q  185 tatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||| |||||||||||| |||||||| |||||||||||    
T  21021332 tatatggcagatgaaggaatttagagttgaaaagtcatggact 21021290  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 20967700 - 20967749
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||| ||||||    
T  20967700 attttgttatatggcaaatgacgaaatttagagctgaagagtcttggact 20967749  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 20980604 - 20980653
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||| ||||||  |||||| ||||||||||||| ||||||    
T  20980604 attttgttatatggaaaatgacagaatttagagttgaagagtcttggact 20980653  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 50645558 - 50645508
Alignment:
Q  175 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  50645558 ctcattttgttatgtggcaaatgaaggattttggagttcaagagtcttgga 50645508  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 4570927 - 4570976
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||||||||| ||||||| |||||||| || ||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggact 4570976  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 39379131 - 39379082
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||| |||||||||| |||||||||||||| ||||||||||| ||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggact 39379082  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21855453 - 21855404
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||| | |||||||||||||| |||||||| || ||||||    
T  21855453 attttgttatatgggagatgaaggaatttggggttgaagattcttggact 21855404  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 3625740 - 3625783
Alignment:
Q  184 ttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggact 3625783  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 25901350 - 25901302
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||| ||||    
T  25901350 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 25901302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 25915368 - 25915320
Alignment:
Q  177 cattttgttatatggcaaatgaaggaatttggagttgaagagtcatgga 225  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||| ||||    
T  25915368 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 25915320  T

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Target: scaffold0354 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 7471 - 7505
Alignment:
Q  186 atatggcaaatgaaggaatttggagttgaagagtc 220  Q
    ||||||||||||||||||||||||||||| |||||    
T  7471 atatggcaaatgaaggaatttggagttgatgagtc 7505  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 27618461 - 27618540
Alignment:
Q  148 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    ||||||||| ||||||||||       ||||||||||||||||| ||||| | ||| | |||||||||||||| ||||||    
T  27618461 tttgtttttgtcatgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggact 27618540  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 29390288 - 29390325
Alignment:
Q  180 tttgttatatggcaaatgaaggaatttggagttgaaga 217  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaaga 29390325  T

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Target: scaffold0649 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 5438 - 5487
Alignment:
Q  178 attttgttatatggcaaatgaaggaatttggagttgaagagtcatggact 227  Q
    |||||||||||||||| |||||  ||||| ||||||||||||| ||||||    
T  5438 attttgttatatggcagatgaaaaaatttagagttgaagagtcttggact 5487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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