View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_high_2 (Length: 617)
Name: NF7099_high_2
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 46873759 - 46874359
Alignment:
| Q |
1 |
catgacactatgcattgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaacgtgtgtgtgtcttgcattagtcgcgcatcgg |
100 |
Q |
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| T |
46873759 |
catgacactatgcattgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaatgtgtgtgtgtcttgcattagtcgcgcatcgg |
46873858 |
T |
|
| Q |
101 |
acataccttcgatctgaagtgtccatgatacgtatgttaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagc |
200 |
Q |
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| T |
46873859 |
acataccttcgatctgaagtgtccatgatacatatgctaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagc |
46873958 |
T |
|
| Q |
201 |
tatgtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcagtagtgcaattagaccctaatacttgggttcttgagtatcaaagga |
300 |
Q |
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| T |
46873959 |
tatgtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcggtagtgcaattagaccctaatacttgggttcttgagtatcaaagga |
46874058 |
T |
|
| Q |
301 |
gctctatgattgatggtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggca |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874059 |
gctctatgattgattgtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggca |
46874158 |
T |
|
| Q |
401 |
gtttgtggcatttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagtta |
500 |
Q |
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| T |
46874159 |
gtttgtggcatttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagtta |
46874258 |
T |
|
| Q |
501 |
aattattctcaatcagcgcaaagccctcatttcttgtgaggagctccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaattc |
600 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874259 |
aattattctcaatcagtgcaaagccctcatttcttgtgaggagttccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaattc |
46874358 |
T |
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| Q |
601 |
t |
601 |
Q |
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| T |
46874359 |
t |
46874359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 41345835 - 41345799
Alignment:
| Q |
21 |
ccaataatagtttgataaaatggactaattgaatgta |
57 |
Q |
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| T |
41345835 |
ccaataatagtttgagaaaattgactaattgaatgta |
41345799 |
T |
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