View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_high_3 (Length: 577)
Name: NF7099_high_3
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 46873783 - 46873491
Alignment:
| Q |
1 |
attggattcaatgcatagtgtcatgtctagtgccacgtctgtgatttcaagcaaccacaaatcacataaaaagggaaaacattttggagaatttacctca |
100 |
Q |
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| T |
46873783 |
attggattcaatgcatagtgtcatgtctagtgccgcgtctgtgatttcaagcaaccacaaatcacataaaaagggaaaacattttggagaatttacctca |
46873684 |
T |
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| Q |
101 |
gtaactcttcctgataagatagttactgtacgaatagacatcccagtggtgatcattccagctgtttgtagaggccacccccaaattgatacctcctcaa |
200 |
Q |
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| T |
46873683 |
gtaactcttcctgataagatagttactgtacgaatagacatcccagtggtgatcattccagctgtttgtagaggccacccccaaattgatacctcctcaa |
46873584 |
T |
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| Q |
201 |
ttgctgttttgtacaatttgcaccttgaattcaataatagaccatcctatatacaattttagttgatgtttcagctatacttatttattgagc |
293 |
Q |
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| T |
46873583 |
ttgctgttttgtacaatttgcaccttgaattcaataatagaccatcctatatacaattttagttgatgtttcagctatacttatttattgagc |
46873491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 320 - 562
Target Start/End: Complemental strand, 46873464 - 46873222
Alignment:
| Q |
320 |
ctttattttcaaattcatagttctttaacaacccaagaaataaaaaatgcaacattcatactagttctttaacaaatcaagaaactttttcagataaatt |
419 |
Q |
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| T |
46873464 |
ctttattttcaaattcatagttctttaacaacccaagaaataaaaaatgcaacattcatactagttctttaacaaatcaagaaactttttcagataaatt |
46873365 |
T |
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| Q |
420 |
ctacaaacaatacagtacctggttgattttccatgatttatcaataaagctacagttagaaacttttccattcacaatccctcccaattccttctgcaaa |
519 |
Q |
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| T |
46873364 |
ctacaaacaatacagtacctggttgattttccatgatttatcaataaagctacagttagaaacttttccattcacaatccctcccaattccttctgcaaa |
46873265 |
T |
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| Q |
520 |
aacttcaactttccattcaaatcttgaactttatgacatttct |
562 |
Q |
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| T |
46873264 |
aacttcaactttccattcaaatcttgaactttatgacatttct |
46873222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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