View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7099_high_6 (Length: 304)

Name: NF7099_high_6
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7099_high_6
NF7099_high_6
[»] scaffold0114 (1 HSPs)
scaffold0114 (10-193)||(38793-38973)
[»] chr2 (1 HSPs)
chr2 (10-190)||(28610275-28610452)
[»] chr7 (1 HSPs)
chr7 (10-193)||(41329150-41329333)
[»] chr1 (2 HSPs)
chr1 (10-193)||(14479199-14479381)
chr1 (10-100)||(28051391-28051481)
[»] chr4 (4 HSPs)
chr4 (10-193)||(8363072-8363252)
chr4 (10-193)||(26495375-26495562)
chr4 (10-100)||(56157188-56157278)
chr4 (10-63)||(36244577-36244630)
[»] chr3 (2 HSPs)
chr3 (10-193)||(13621635-13621821)
chr3 (10-193)||(49380634-49380817)
[»] chr6 (1 HSPs)
chr6 (56-193)||(11723721-11723856)


Alignment Details
Target: scaffold0114 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 38793 - 38973
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaa--acacagatct 107  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38793 catcatcaaatattcatacattcatcacaattcaaaacaacctagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaacacacagatct 38892  T
Q  108 attttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    |||||         ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38893 atttt-----ttttcttcagattctcgaaatacaccacaacaacaatctgttcccatttctccatcaatctgagctttcttcaaat 38973  T

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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 28610275 - 28610452
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaa--acacagatct 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  28610275 catcatcaaatattcatacattcatcacaattcacaacaacctagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaacacacagatct 28610374  T
Q  108 attttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttca 190  Q
    ||||           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610375 attt-----attttttttagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttca 28610452  T

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Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 41329333 - 41329150
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaat-aaaacttggaa--acacagatc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||||| |||    
T  41329333 catcatcaaatattcatacattcatcacaattcacaacaacccataaaaaagaagaatttaaacccaaaaaattaataaaaacttggaaacacacatatc 41329234  T
Q  107 tattttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    ||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329233 tatttt---tttcttcttcagattctggaaataaaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 41329150  T

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Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 14479381 - 14479199
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaa--cacagatct 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  14479381 catcatctaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaacacacagatct 14479282  T
Q  108 attttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    |||||         ||| ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  14479281 atttt---ttttttctttagattctcgaaatacaccacaacaacaatcagttctcatttccccatcaatctgagctttcttcaaat 14479199  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 28051481 - 28051391
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28051481 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaaca 28051391  T

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Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 8363252 - 8363072
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaat-aaaacttggaa--acacagatc 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  8363252 catcatcaaatattcatacattcatgacaattcacaacaacccataaaaaagaagaatttaaacccaaaaaattaataaaaacttggaaacacacagatc 8363153  T
Q  107 tattttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    || |||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363152 taattt------ttttttcagattctggaaataaaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 8363072  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 26495375 - 26495562
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaat-aaaacttggaa--acacagatc 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||||| |||    
T  26495375 catcattaaatattcatacattcatcacaattcacaacaacccataaaaaagaagaatttaaacccaaaaaattaataaaaacttggaaacacacaaatc 26495474  T
Q  107 tattttgnnnnnnnnctt-cagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    | ||||          || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26495475 tttttttttttcttttttccagattctggaaataaaccacaacaacaatcagttcccatttctccatcaatctgaactttcttcaaat 26495562  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 56157188 - 56157278
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaaca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  56157188 catcatcaaatattcatatattcatcacaattcacaacaacccagaaaaaagaagaatataaacccaaaaaattaataaaacttggaaaca 56157278  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 36244630 - 36244577
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36244630 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaa 36244577  T

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Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 13621821 - 13621635
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaataaaacttggaaa--cacagatct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||    
T  13621821 catcatcaaatattcatacattcatcacaattcacaacaacccataaaaaagaagaatttaaacccaaaaaattaataaaacttggaaacacacatatct 13621722  T
Q  108 attttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttct--ccatcaatctgagctttcttcaaat 193  Q
    |||||          ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||    
T  13621721 atttt-ttattttttttcagattctggaaatacaccacaacaacaatcagttcccatttctccccatcaatttgtgctttcttcaaat 13621635  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 49380817 - 49380634
Alignment:
Q  10 catcatcaaatattcatacattcatcacaattcacaacaacccagaaaaaagaagaatttaaacccaaaaaattaat--aaaacttggaaacacagatct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||| |  |    
T  49380817 catcatcaaatattcatacattcatcacaattcacaacaacccataaaaaagaagaatttaaacccaaaaaattaataaaaaatttggaaacacacaaat 49380718  T
Q  108 attttgnnnnnnnncttcagattctggaaatacaccacaacaacaatcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
     ||||          ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49380717 ctttt--ttttttttttcagattctgaaaataaaccacaacaacaatcagttctcatttctccatcaatctgagctttcttcaaat 49380634  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 11723856 - 11723721
Alignment:
Q  56 aaaaagaagaatttaaacccaaaaaattaataaaacttggaaacaca--gatctattttgnnnnnnnncttcagattctggaaatacaccacaacaacaa 153  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||||         ||||||||||| ||||||||||||||||||||    
T  11723856 aaaaagacgaatttaaacccaaaaaattaataaaacttagaaacacacagatctatttt----tttttcttcagattctcgaaatacaccacaacaacaa 11723761  T
Q  154 tcagttcccatttctccatcaatctgagctttcttcaaat 193  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11723760 tcagttcccatttctccatcaatctgagctttcttcaaat 11723721  T

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