View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_1 (Length: 474)
Name: NF7099_low_1
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 456
Target Start/End: Complemental strand, 31652340 - 31651889
Alignment:
| Q |
6 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652340 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
31652241 |
T |
|
| Q |
106 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652240 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
31652141 |
T |
|
| Q |
206 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652140 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctc |
31652041 |
T |
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| Q |
306 |
tataattggtttatcactgctctcactggtaaattgatttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaagggagcttccata |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
31652040 |
tataattggtttatcactgctctcactggtaaattgatttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagctttcata |
31651941 |
T |
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| Q |
406 |
tcatgatgtacctgcaatgagatacataaat-tttttcatattattagttag |
456 |
Q |
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| T |
31651940 |
tcatgatgtacctgcaatgagatacataattgtttttcatattattagttag |
31651889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Complemental strand, 31702569 - 31702120
Alignment:
| Q |
6 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
105 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702569 |
tttggtgttaggtggtcttctaaagttagaatcactggaaaatcagatttaacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
31702470 |
T |
|
| Q |
106 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
205 |
Q |
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| T |
31702469 |
gagtggtgagagtcctgcattgatttcaagaattaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
31702370 |
T |
|
| Q |
206 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctc |
305 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31702369 |
atagtacatactttccatgaactactttaataccaccatctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaaagcctc |
31702270 |
T |
|
| Q |
306 |
tataattggtttatcactgctctcactggtaaattgatttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaagggagcttccata |
405 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31702269 |
tataattggtttatcactgctctcactagtaaattgatttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagcttccata |
31702170 |
T |
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| Q |
406 |
tcatgatgtacctgcaatgagatacataaat--tttttcatattattagt |
453 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31702169 |
tcatgatgtacctgcaatgagatacataaattgtttttcatattattagt |
31702120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 244 - 425
Target Start/End: Complemental strand, 35507887 - 35507706
Alignment:
| Q |
244 |
tctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctctataattggtttatcactgctctcactggtaaattgat |
343 |
Q |
| |
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|||||| | |||| |||||||||||| ||||| || || || || ||||||| || |||| ||| ||||||| ||||||| |||||| | | ||||| |
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| T |
35507887 |
tctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgat |
35507788 |
T |
|
| Q |
344 |
ttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaagggagcttccatatcatgatgtacctgcaatga |
425 |
Q |
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| T |
35507787 |
ttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
35507706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 420
Target Start/End: Complemental strand, 35521313 - 35521135
Alignment:
| Q |
242 |
catctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctctataattggtttatcactgctctcactggtaaattg |
341 |
Q |
| |
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||||||||| |||| |||||||||||| ||||| || || || || ||| ||| ||| |||| ||| |||||| |||||||| |||||| | | || |
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| T |
35521313 |
catctttagctgaatttggccataaatcgagttctataacgcgcacgcctcgttgcaacgcctttatgattggtacatcactgcaatcactgcttagctg |
35521214 |
T |
|
| Q |
342 |
atttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaagggagcttccatatcatgatgtacctgc |
420 |
Q |
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||| ||||| || ||||||||||||||||| || |||||||||||||| || || || | ||| ||||| ||||||||| |
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| T |
35521213 |
attgccagttagataggaattgtgtcctgtgtatatgaaataatgtgataacggggcattcatgtcatggtgtacctgc |
35521135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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