View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_11 (Length: 247)
Name: NF7099_low_11
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 35900288 - 35900513
Alignment:
| Q |
16 |
tgtcattgtgaaaaatgttttggctccagagtataaggtcgt-tggtacatgaatttttgttctctgtttttatattattcttaattatgatatacacct |
114 |
Q |
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| T |
35900288 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgtctggtacatgaatttttgttctctgtttttatattattcttaactatgatatacacct |
35900387 |
T |
|
| Q |
115 |
tttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900388 |
tttaaaatcaatgtaaaaaacatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
35900487 |
T |
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| Q |
215 |
ggctcattatgttaaaatgatgatgt |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35900488 |
ggctcattatgttaaaatgatgatgt |
35900513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 35882363 - 35882478
Alignment:
| Q |
1 |
atcaaatttaaactctgtcattgtgaaaaatgttttggctccagagtataaggtcgttggtacatga-atttttgttctctgtttttatattattcttaa |
99 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
35882363 |
atcagatttaaactctgtcattgtgaaaaatgtttgggctccagagtacaaggtc--tggtacatgatgtttttgttctatgtttttatattattcttag |
35882460 |
T |
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| Q |
100 |
ttatgatatacacctttt |
117 |
Q |
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| T |
35882461 |
ctaggatatacacttttt |
35882478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 35882635 - 35882717
Alignment:
| Q |
116 |
ttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctag |
198 |
Q |
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||||||||||| ||||||||||||||| |||||||| ||||||||||| || ||||| ||||||| |||||||||||||||| |
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| T |
35882635 |
ttaaaatcaatctaaaaagcatctagttcaagggaggaagattctggttatggttggcgttaattagctctacttttggctag |
35882717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 10211953 - 10211850
Alignment:
| Q |
6 |
atttaaactctgtcattgtgaaaaatgttttggctccagagtataaggtcgttggtacatgaa-tttttgttctctgtttttatattattcttaattatg |
104 |
Q |
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|||| |||| |||||| ||||||||||||||||||| | |||| |||||| |||||| |||| |||||||||| | |||||||||||||| || |||| |
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| T |
10211953 |
atttgaactttgtcatcgtgaaaaatgttttggctcaaaagtacaaggtc--tggtacctgaagtttttgttctgtacttttatattattctcaactatg |
10211856 |
T |
|
| Q |
105 |
atatac |
110 |
Q |
| |
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| |||| |
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|
| T |
10211855 |
acatac |
10211850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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