View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_2 (Length: 242)
Name: NF7099_low_2
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 37291672 - 37291883
Alignment:
| Q |
18 |
caaatggttttccttgtccaactctccacaatccttctgatcactatttaaggatcataaacaaagattttgaaatggtaagaaaactaagttaggttag |
117 |
Q |
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| T |
37291672 |
caaatggttttccttgtccaactctccacaatccttctgatcactatttaaggatcataaacaaagattttgaaatggtaagaaaactaagttaggttag |
37291771 |
T |
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| Q |
118 |
ttttcatttaggaagtggaaaactttaaacttaatatgattcattttattatctacaggatgttgaagaaggatttggtaagggagtaaccacagaagaa |
217 |
Q |
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| T |
37291772 |
ttttcatttaggaagtggaaaactttaaacttaatatgattcattttattatctacaggatgttgaagaaggatttggtaagggagtaaccacagaagaa |
37291871 |
T |
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| Q |
218 |
gcaattggtatc |
229 |
Q |
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| T |
37291872 |
gcaattggtatc |
37291883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 37298679 - 37298753
Alignment:
| Q |
17 |
tcaaatggttttccttgtccaactctccacaatccttctgatcactatttaaggatcataaacaaagattttgaa |
91 |
Q |
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| T |
37298679 |
tcaaatggtttcccttgcccaactcactataatccttctgatcactacttaaggatcataaacaatgattttgaa |
37298753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 13081828 - 13081747
Alignment:
| Q |
22 |
tggttttccttgtccaactctccacaatccttctgatcactatttaaggatcataaacaaagattttgaaatggtaagaaaact |
105 |
Q |
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| T |
13081828 |
tggttttccttgtccaaacctacacaaggcttcagatcatttcttaaggatcataaac--tgattttgaaatggtaagtaaact |
13081747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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