View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_3 (Length: 230)
Name: NF7099_low_3
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 24153363 - 24153169
Alignment:
| Q |
12 |
atgaacataggacaagaaaagaaaaatgtaaagttactaagcaaaccttctacgtcatgaaacttagttgactatgaatactttgacataaatgaatgat |
111 |
Q |
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| T |
24153363 |
atgaacataggacaagaaaagaaaaatgtaaagttactaagcaaaccttctacgtcatgaaacttagttgactatgaatactttgacataaaagaatgat |
24153264 |
T |
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| Q |
112 |
taacataggacaagaaaataaaaatgtagagtttccaagtaaaccttctcaatcatgaagcttggatgcatgcatgctcctttatgagcttctac |
206 |
Q |
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| T |
24153263 |
taacataggacaagaaaataaaaatgtagagtttccaagtaaaccttctaaatcatgaagcttggatgcatgcatgctcctttatgagcttctac |
24153169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 24147914 - 24147719
Alignment:
| Q |
12 |
atgaacataggacaagaaaagaaaaatgtaaagttactaagcaaaccttctacgtcatgaaacttagttgactatgaatacttt-gacataaatgaatga |
110 |
Q |
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| T |
24147914 |
atgaacgtaggacaagaaaagaaaaatgtagagttactaagcaaaccttctacgtcatgaaacttagtttactgtgaatactttagacataaatgaatga |
24147815 |
T |
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| Q |
111 |
ttaacataggacaagaaaataaaaatgtagagtttccaagtaaaccttctcaatcatgaagcttggatgcatgcatgctcctttatgagcttctac |
206 |
Q |
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| T |
24147814 |
taaacataggacaagaaaataaaaatttagagtttccaagtaaaccttctaaatcatgaagcttggatgcatgcatgctcctttatgagcttctac |
24147719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 24153390 - 24153313
Alignment:
| Q |
76 |
tagttgactatgaatactttgacataaatgaatgattaacataggacaagaaaataaaaatgtagagtttccaagtaaaccttct |
160 |
Q |
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| T |
24153390 |
tagttgactatgaatactttgacataaatg-------aacataggacaagaaaagaaaaatgtaaagttactaagcaaaccttct |
24153313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 24141197 - 24141114
Alignment:
| Q |
76 |
tagttgactatgaatactttgacataaatgaatgattaacataggacaagaaaataaaaatgtagagtttccaagtaaaccttc |
159 |
Q |
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| T |
24141197 |
tagttgactattaatacttggacaaaaatgaatgatgaacataggagataaaatgaaagatgtagagtttataagcaaaccttc |
24141114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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