View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_4 (Length: 465)
Name: NF7099_low_4
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 27566617 - 27566255
Alignment:
| Q |
11 |
caaaggacagaaaggattcaaattcaattttgagttacctagggagtttcacacttttacctaattccacacaccaaatattacaagaaatttctttgca |
110 |
Q |
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| T |
27566617 |
caaaggacagaaaggattcaaattcaattttgagttacctagggagtttcacacttttacctaattccactcaccaaatattacaagaactttctttgca |
27566518 |
T |
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| Q |
111 |
attacatataggagttaatgcattgttt--attaccactaacccttctataaaatacccttccttatttttctcttccattaagataatcaccctctttc |
208 |
Q |
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| T |
27566517 |
attacatataggagttaatgcattttttttattaccactaacccttctataaaatacccttccttatttttctcttccattaagataatcaccctctttc |
27566418 |
T |
|
| Q |
209 |
atcatcttctactttcatcattcaaactttcctccaagtccaaatcaaacatgaagcaccaaaaaatactcaaaaaattccttccaaatctattattact |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27566417 |
atcatcttctactttcatcattcaaactttcctccaagtccaaatcaaacatgaagcaccaaaaaatactcaaaatattccttccaaatctattattact |
27566318 |
T |
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| Q |
309 |
agcaactatcctaatcctttcaacaacatggacaatagcacaagaagttggtaagcaagatca |
371 |
Q |
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| T |
27566317 |
agcaactatcctaatcctttcaacaacatggacaatagcacaagaagttggtaagcaagatca |
27566255 |
T |
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