View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7099_low_5 (Length: 430)
Name: NF7099_low_5
Description: NF7099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7099_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 46874540 - 46874951
Alignment:
| Q |
1 |
aaaatatggactgaattgtatttagccccttaaattgaacaacttaagtcaagttagtgatttttcaaatttacggccacaattttgaagattctatgtt |
100 |
Q |
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| T |
46874540 |
aaaaaatggactgaattgtatttagccccttaaattgaacaacttaagtcaatttagtcatttttcaaatttacggccacaattttgaagattctatgtt |
46874639 |
T |
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| Q |
101 |
tatcttgatgcatcaagagactattcaagtttatgctatgtcttttgttgatttcaatagatgttaattgaagagatattaatgtagaaagactaagcct |
200 |
Q |
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| T |
46874640 |
tatcttgatgcatcaagagactattcaagtttatgctatgtcttttgttgatttcaatagatgttaattgaagagatattaatgtagaaagactaagctt |
46874739 |
T |
|
| Q |
201 |
gtgtttgtttgtgcggcacatatccactagacgcacgtcttgaaagaagctacttagcttttactttttcactgtgtacatgggtttgaaacgtgcattt |
300 |
Q |
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| T |
46874740 |
gtgtttgtttgtgcggcacatatccaagagacgcacgtcttgaaagaagctacttagcttttactttttcactgtgta-atgggtttgaaacgtgcattt |
46874838 |
T |
|
| Q |
301 |
ggcctcgaagacgtcaaaccaaacatagcctaaattgatagagtttctttaattgaaggaactaatctgttattttacaaatttaaaagataaaaatact |
400 |
Q |
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| T |
46874839 |
ggcctcgaagacgtcaaaccaaacacagcctaaattgatagagtttctttaattgaaggaa-----ctgttattttacaaatttaaaagataaaaatact |
46874933 |
T |
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| Q |
401 |
tgacttttacaattttga |
418 |
Q |
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| T |
46874934 |
tgacttttacaattttga |
46874951 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 15801650 - 15801606
Alignment:
| Q |
81 |
aattttgaagattctatgtttatcttgatgcatcaagagactatt |
125 |
Q |
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| T |
15801650 |
aattttaaaggttctatgtttgtcttgatgcatcaaaagactatt |
15801606 |
T |
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