View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7100_high_2 (Length: 711)

Name: NF7100_high_2
Description: NF7100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7100_high_2
NF7100_high_2
[»] chr3 (1 HSPs)
chr3 (19-695)||(35429657-35430331)


Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Original strand, 35429657 - 35430331
Alignment:
Q  19 agagttagacacatggacagtgtggcagaacatgctgctcttttcttgcaattgtagctataatataataataattgaagtgtgatgaaatccattttcc 118  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35429657 agagttagacacatgga--gtgtggcagaacatgctgctcttttcttgcaattgtagctataatataataataattgaagtgtgatgaaatccattttcc 35429754  T
Q  119 taccaggaccctggtggcatgacaacattattgtcaatattatataattgccattcaattataggttttatcaacaacttctatgatgcctacttttatt 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35429755 taccaggaccctgctggcatgacaacattattgtcaatattatataattgccattcaattataggttttatcaacaacttctatgatgcctacttttatt 35429854  T
Q  219 cctgaaattattgacaaacaccattttgttatgttgaaccttctcagtcttataagggaatgtgcatgagtagtttattataaattatcttattctttac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35429855 cctgaaattattgacaaacaccattttgttatgttgaaccttctcagtcttacaagggaatgtgcatgagtagtttattataaattatcttattctttac 35429954  T
Q  319 cttgcaaatttgatgatccagaatggaagtttcttactttcttgcctgtttcatatttattgatcattgtcttttgttcactgacagttgcttggaagaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35429955 cttgcaaatttgatgatccagaatggaagtttcttactttcttgcctgtttcatatttattgatcattgtcttttgttcattgacagttgcttggaagaa 35430054  T
Q  419 ggggcagaggagtttctattgaaacctgtcaagttggcagatgtgaaacgcttaacagatttcataatgagaggcgaagggaagaaagtcggaggaaaag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35430055 ggggcagaggagtttctattgaaacctgtcaagttggcagatgtgaaacgcttaacagatttcataatgagaggcgaagggaagaaagtcggaggaaaag 35430154  T
Q  519 tatctcaaaaaagaagacggtcagatgattgtatttcatctctatcaactgcttgtccaacatgtgaactgtcgccattgtcaccgtctgcaatgtcgtc 618  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  35430155 tatctcaaaaaagaagtcggccagatgattgtatttcatctctatcaactgcttgttcaacatgtgaactgttgccattgtcacagtctgcaatgtcgtc 35430254  T
Q  619 aaagaaatccagactataaccatttattcatttagcgttgccttttatgtctccatttttgctgaactaatgttcat 695  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35430255 aaagaaatccagactataaccattgattcatttagcggtgccttttatgtctccatttttgctgaactaatgttcat 35430331  T

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