View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7100_high_3 (Length: 580)
Name: NF7100_high_3
Description: NF7100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7100_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 45522507 - 45523083
Alignment:
| Q |
1 |
tagtatatgaaactaatataaccgtatgattattttttagtactagtttagtttgtgagatacaatttagattttcttaaacggaatatttgtttgctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45522507 |
tagtatatgaaactaatataaccgtatgattattttttagtactagtttagtttgtgagatacaatttagattttcttaaacggaatatttgtttgctta |
45522606 |
T |
|
| Q |
101 |
aataaatatgtctttgaactaataatacgttactgcaacacaagaacaattgtttttattttaagggtgctcccgaaacactctttaagaaatcaaaatt |
200 |
Q |
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| T |
45522607 |
attaaatatgtctttgaactaataatatgttactgcaacacaagaacaattgtttttattttaagggtgcttccgaaacactctttaagaaatcaaaatt |
45522706 |
T |
|
| Q |
201 |
tagaaaatattttacaaaaaagttaaatgt---------------attgattatgtagatttttctaaaatcttactattaaaagtgttaaa-agtgctc |
284 |
Q |
| |
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|| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45522707 |
taaaaaatatttcacaaaaaagttaaatgttataaatttcaatacattgattatgtagatttttctaaaatcttactattaaaagtgttaaagagtgctt |
45522806 |
T |
|
| Q |
285 |
acttttagtttaattataaatggatgattaaatggaatgatatatacagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcattt |
384 |
Q |
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| T |
45522807 |
acttttagtttaattataaatgaatgattaaatggaatgatatatacagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcattt |
45522906 |
T |
|
| Q |
385 |
gctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgttgtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacctc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45522907 |
gctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgttgtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacctc |
45523006 |
T |
|
| Q |
485 |
gaaaccaatctggtgaaatctgcataagaggcgaccaaattatgaaaggtgatgtatatatatcatatcattttatt |
561 |
Q |
| |
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|
| T |
45523007 |
gaaaccaatctggtgaaatctgcataagaggcgaccaaattatgaaaggtgatgtatatatatcatatcattttatt |
45523083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 330 - 534
Target Start/End: Original strand, 350993 - 351197
Alignment:
| Q |
330 |
acagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcatttgctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgtt |
429 |
Q |
| |
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|||||| || || |||||||| ||||| ||||| ||||| ||| ||||| ||||||||||||| ||| | |||| ||| |||||||||||||||| ||| |
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| T |
350993 |
acagggttatgggatgactgaagcaggtccagttttaacaatgtgtttatcatttgctaaagagccaatagatgtgaaatcaggtgcatgtggaacagtt |
351092 |
T |
|
| Q |
430 |
gtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacctcgaaaccaatctggtgaaatctgcataagaggcgaccaaattatga |
529 |
Q |
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|| |||||||| |||||||||||||| |||||| | | || ||||| ||| |||| ||| |||||||||| || || |||||||||||||| |||| |
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| T |
351093 |
gttagaaatgctgagatgaagattgttgatcctcaaaatgactcctctttgcctagaaatcaacctggtgaaatttgtattagaggcgaccaaatcatga |
351192 |
T |
|
| Q |
530 |
aaggt |
534 |
Q |
| |
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||||| |
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|
| T |
351193 |
aaggt |
351197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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