View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7100_low_6 (Length: 443)
Name: NF7100_low_6
Description: NF7100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7100_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 3056109 - 3055693
Alignment:
| Q |
9 |
agcacagaaccaaccaaaacccaagtttctctattattgatcttgttcacaattgttgaatttgaatttggaggaaagatagcaatggaggtattatgta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3056109 |
agcacagaaccaaccaaaacccaagtttctctattattgatcttgttcacaattgttgaatttgaatttggaggaaagatagcaatggaggtattatgta |
3056010 |
T |
|
| Q |
109 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056009 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
3055910 |
T |
|
| Q |
209 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3055909 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
3055810 |
T |
|
| Q |
309 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3055809 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggat |
3055710 |
T |
|
| Q |
409 |
catcaggatcaaccagt |
425 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3055709 |
catcaggatcaaccagt |
3055693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 109 - 425
Target Start/End: Complemental strand, 3043189 - 3042873
Alignment:
| Q |
109 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
208 |
Q |
| |
|
|||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3043189 |
ttctcactttgaagaaggccttagcaccattaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
3043090 |
T |
|
| Q |
209 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
3043089 |
aatagccacagaacaatagcaatcttccatacaaactttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacatagaccaatcaacg |
3042990 |
T |
|
| Q |
309 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggat |
408 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||| |
|
|
| T |
3042989 |
tcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggat |
3042890 |
T |
|
| Q |
409 |
catcaggatcaaccagt |
425 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
3042889 |
catcggcatcaaccagt |
3042873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 109 - 425
Target Start/End: Original strand, 25125085 - 25125401
Alignment:
| Q |
109 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
208 |
Q |
| |
|
|||| ||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25125085 |
ttctcactttgaagaaggccttagcaccattaagatttggatcatatttcccatttgagagtggtaacttctttttccaacaactatcacctaacctgaa |
25125184 |
T |
|
| Q |
209 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
25125185 |
aatagccacagaacagaagcaatcttccatacactctttcatacattgttcttcagtaaaaggcttttgaagcacagaatctgacatagaccaatcaacg |
25125284 |
T |
|
| Q |
309 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggat |
408 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||||| |
|
|
| T |
25125285 |
gcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggat |
25125384 |
T |
|
| Q |
409 |
catcaggatcaaccagt |
425 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
25125385 |
catcgggatcaaccagt |
25125401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 424
Target Start/End: Complemental strand, 3035235 - 3034832
Alignment:
| Q |
9 |
agcacagaaccaaccaaaacccaagtttctctattattgatcttgttcacaattgttgaatttgaatttggaggaaagatagcaatggaggtattatgta |
108 |
Q |
| |
|
|||||||||||| |||||||| | ||||| |||||||| ||||||||||||| | ||| |||| |||||| ||| ||| ||||||| | |
|
|
| T |
3035235 |
agcacagaaccagccaaaaccaacgtttccctattattagtcttgttcacaatgg------ttggatttagaggaa------caagggatgtattatctt |
3035148 |
T |
|
| Q |
109 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
208 |
Q |
| |
|
|||| |||||||| || ||||||||| ||| |||||||| |||| | |||||||||| ||||||||| |||| ||||| ||||||||||| ||||||| |
|
|
| T |
3035147 |
ttctcactttcaagaaagccttagcatcattaagagttgcatcaactctcccatttgaaagtggtaacctcttcttccaacaactatcaccgtacctgaa |
3035048 |
T |
|
| Q |
209 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
308 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||| || | ||||||| | |||| |||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
3035047 |
aatagccacataacacatgcaatcttccatacaagattccttacattgtttttcattaaaaggcttttgaagcacaaaatctgagtaaggccaatcaatg |
3034948 |
T |
|
| Q |
309 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggat |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3034947 |
tcagtcatagtctcaaactcatagagatcatttctgtttttacttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggat |
3034848 |
T |
|
| Q |
409 |
catcaggatcaaccag |
424 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
3034847 |
cttcaggatcaaccag |
3034832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 95 - 425
Target Start/End: Original strand, 3063268 - 3063598
Alignment:
| Q |
95 |
ggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaacta |
194 |
Q |
| |
|
||||| ||||| | |||| |||||||| || ||||||||||||| |||||||| |||| | |||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
3063268 |
ggaggcattatcttttctcactttcaagaaagccttagcaccattaagagttgcatcaactctcccatttgaaagtggtaacttcttcttccaacaacta |
3063367 |
T |
|
| Q |
195 |
tcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgaca |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||| || ||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
3063368 |
tcacctaacctgaaaatagccacagaacacaagcaatcatccatacaagatttcctacactgttcttcagtaaaaggcctttgaagcacataatctgata |
3063467 |
T |
|
| Q |
295 |
taggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatcttctgcacatccttgtatgaagtctggcttgca |
394 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||| | ||| ||||||||||| |
|
|
| T |
3063468 |
gaggccaatcagtgtcaatcaaaatctcaaactcatagagatcatttctctttttacttggatcatcttctccacatccttggacgaaatctggcttgca |
3063567 |
T |
|
| Q |
395 |
gctaccaagtggatcatcaggatcaaccagt |
425 |
Q |
| |
|
||| ||| |||||||| |||||||| |||| |
|
|
| T |
3063568 |
gctgccatatggatcattaggatcaatcagt |
3063598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 161 - 425
Target Start/End: Original strand, 3071012 - 3071273
Alignment:
| Q |
161 |
atttgagagtggtaacttctttttccagcaactatcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctttcatacattgatct |
260 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||| ||||||| || |
|
|
| T |
3071012 |
atttgagagtggtaacttcttcttccaacaactatcacctaacctccaaatagccacagaacacatgcaatcttccatactagctttcctacattgttca |
3071111 |
T |
|
| Q |
261 |
tcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcat |
360 |
Q |
| |
|
|| |||||| || || ||||||| | |||||| | |||||||||| ||||| ||||| || ||||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
3071112 |
tctgtaaaacgcgttagaagcacggcatctgatagaggccaatcagtgtcattcaaaacctgaaactcatatagatccttt---gttttactttgttcat |
3071208 |
T |
|
| Q |
361 |
cttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagt |
425 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
3071209 |
cttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagt |
3071273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 3040977 - 3040794
Alignment:
| Q |
109 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
208 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| | |||||| ||| |||||| |
|
|
| T |
3040977 |
ttctcacttttaagaaggccttagcaccatcaagtgttgcatcaactctcccatttgagagtggtaacttctttttaaaacaactactaccgtccctgaa |
3040878 |
T |
|
| Q |
209 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctga |
292 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| ||| | |||||||||||||||| | ||||||| | |||||| |
|
|
| T |
3040877 |
aatagccacagaacacaaacaatcttccatgcaagctttcatgcatcgttcttcagtaaaaggctctagaagcacggcatctga |
3040794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 3067559 - 3067634
Alignment:
| Q |
350 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagt |
425 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
3067559 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagt |
3067634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 3040763 - 3040688
Alignment:
| Q |
346 |
ttttacttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaac |
421 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
3040763 |
ttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaac |
3040688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 3037293 - 3037375
Alignment:
| Q |
93 |
atggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaa |
175 |
Q |
| |
|
||||||||||||| | |||| | |||||| || ||||||||||||| |||||||| |||| | ||||||||||||||||||| |
|
|
| T |
3037293 |
atggaggtattatcttttctcattttcaagaaagccttagcaccattaagagttgcatcaactctcccatttgagagtggtaa |
3037375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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