View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7101_low_1 (Length: 588)
Name: NF7101_low_1
Description: NF7101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7101_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 29204801 - 29204362
Alignment:
| Q |
16 |
atctccaccatttaagtactccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204801 |
atctccaccatttaagtactccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattag |
29204702 |
T |
|
| Q |
116 |
atttgttaacaacgaacatcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204701 |
atttgttaacaacgaacatcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctc |
29204602 |
T |
|
| Q |
216 |
gctcagccaaaataccttcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204601 |
gctcagccaaaataccttcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattat |
29204502 |
T |
|
| Q |
316 |
tcagttagttaatttgacaagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaacttcag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204501 |
tcagttagttaatttgacaagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaacttcag |
29204402 |
T |
|
| Q |
416 |
gaatagatacatgctttttgtacgcactgtttaataacat |
455 |
Q |
| |
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| T |
29204401 |
gaatagatacatgctttttgtacgcactgtttaataacat |
29204362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 443 - 588
Target Start/End: Original strand, 29205830 - 29205975
Alignment:
| Q |
443 |
tgtttaataacatcccacacggaaaagagtctacagaggcaccgagaagtaagaacaacatatttatgtttaaaatataatcatggtggtttggcctaga |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205830 |
tgtttaataacatcccacacggaaaagagtctacagaggcaccgagaagtaagaacaacatatttatgtttaaaatataatcatggtggtttggcctaga |
29205929 |
T |
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| Q |
543 |
ggttctcgaacttgcacaaacttgtgttcctttcaaaatagttcct |
588 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29205930 |
ggttctcaaacttgcacaaacttgtgttcctttcaaaatagttcct |
29205975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 12647075 - 12647514
Alignment:
| Q |
16 |
atctccaccatttaagtactccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647075 |
atctccaccatttaagtactccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattag |
12647174 |
T |
|
| Q |
116 |
atttgttaacaacgaacatcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12647175 |
atttgttaacaacgaacatcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaaggatttcgaacagatataagaatgtctc |
12647274 |
T |
|
| Q |
216 |
gctcagccaaaataccttcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12647275 |
gctcagccaaaataccttcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaggaatagtttaaacgttttctaattat |
12647374 |
T |
|
| Q |
316 |
tcagttagttaatttgacaagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaacttcag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647375 |
tcagttagttaatttgacaagactttctattctaatggtttctataagctataacaccgttgctggactgaataatactagttttattttacaacttcag |
12647474 |
T |
|
| Q |
416 |
gaatagatacatgctttttgtacgcactgtttaataacat |
455 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
12647475 |
gaatggatacatgctttttgtatgcactgtttaataacat |
12647514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 443 - 588
Target Start/End: Complemental strand, 12646045 - 12645900
Alignment:
| Q |
443 |
tgtttaataacatcccacacggaaaagagtctacagaggcaccgagaagtaagaacaacatatttatgtttaaaatataatcatggtggtttggcctaga |
542 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646045 |
tgtttaacaacatcccacacagaaaagagtctacagaggcaccaagaagtaagaacaacatatttatgtttaaaatataatcatggtggtttggcctaga |
12645946 |
T |
|
| Q |
543 |
ggttctcgaacttgcacaaacttgtgttcctttcaaaatagttcct |
588 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
12645945 |
ggttctcaaacttgcaaaaacttgtgttcctttcaaaatagttcct |
12645900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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