View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7101_low_3 (Length: 210)
Name: NF7101_low_3
Description: NF7101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7101_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 43015324 - 43015151
Alignment:
| Q |
23 |
agcatgagtgctatcgtttgcttgacgtttactgaacacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtac |
122 |
Q |
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| T |
43015324 |
agcatgagtgttatcgtttgcttgacgtttactaaacacaactttgtaattgttgtgattcacgaggagagttttacaatc-tgcaagatcacaccgtac |
43015226 |
T |
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| Q |
123 |
actaagtgatttgatttatctttgttaa---catcatcaaccaccattttacaatccaattccaatacacacagg |
194 |
Q |
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| T |
43015225 |
tctaagtgatttgatttatctttgttaacatcatcatcaacaaccattttacaatccaattccaatacacacagg |
43015151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 22944396 - 22944473
Alignment:
| Q |
39 |
tttgcttgacgtttactgaacacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcaca |
116 |
Q |
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| T |
22944396 |
tttgcttgacgtttggtaaacacaattttgtaattattgtgacgtgagaggagagttttgtaatcttgcaagatcaca |
22944473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 36487941 - 36488053
Alignment:
| Q |
57 |
aacacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtacactaagtgatttgatttatctttgttaacatcat |
156 |
Q |
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| T |
36487941 |
aacacaactttgtacctgttgtgattcatgagaataattttacaatcttggaagatcataccgtactttgagtgatttaatttatttttgttattatcat |
36488040 |
T |
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| Q |
157 |
caaccaccatttt |
169 |
Q |
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| T |
36488041 |
caaccaccatttt |
36488053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 52142087 - 52141963
Alignment:
| Q |
58 |
acacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtacactaagtgatttgatttatctttgttaacatcatc |
157 |
Q |
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| T |
52142087 |
acacaactctgttagtgttgtgattcgtgaatacagttttacaatcttgtaagatcgcattgtactctgagtgatttaagttgtctttgttgacatcaac |
52141988 |
T |
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| Q |
158 |
aaccaccattttacaatccaattccaata |
186 |
Q |
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| T |
52141987 |
aa----caatttacaatccatttccaata |
52141963 |
T |
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