View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7102_high_1 (Length: 539)
Name: NF7102_high_1
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 522
Target Start/End: Original strand, 33564610 - 33565087
Alignment:
| Q |
32 |
aaaaaagtgtgaatttttatttttattataaatataaatagttaatttaaattgtcttcacaaaacaattataatcttttgggtgttaaatgattcggat |
131 |
Q |
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| T |
33564610 |
aaaaaaggatgaatttttatttttattataaatataaatagttaatttaaattttcttcacaaaacaattataatcttttgggtgttaaatgatttggat |
33564709 |
T |
|
| Q |
132 |
tcggttcttctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatatcataataaaccataaat |
231 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33564710 |
tcggttcttctaaagtgaacaacttatttgaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatatcataataaatcataaat |
33564809 |
T |
|
| Q |
232 |
tagctacaatagcaacatttggttttctcaccttatactattcactttagatggtaaaaatttgagcaactgaggtaattgttgtaaaaga-----annn |
326 |
Q |
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| T |
33564810 |
tagctacaataacaacatttggttttctcaccttatactatcta------aaagtaaaaatttgagcgactgaggta--tgttgtaaaagattttttttt |
33564901 |
T |
|
| Q |
327 |
nnnnncggttttagatcaaatagtaagcaactgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatt |
426 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||||| || | |||| || |||||||||||||||||| ||||||| ||||| |
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| T |
33564902 |
ttttttggttttagattaaatagtaagccattgaaattaaactcacacaactataaggtctcgggttcgaacctaggtcacgacgtccagccttacaatt |
33565001 |
T |
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| Q |
427 |
tcgacattttttacaaagtcataaaaggatttataatttgcatgttgaataataaaatattttactcggataagttggatcatgtaggtatccctt |
522 |
Q |
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| T |
33565002 |
tcgacattttttacaaagtc----------ttataatttgcatgttgaataataaaatattttactcggataagttggatcatgtaggtatccctt |
33565087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 4800935 - 4800901
Alignment:
| Q |
401 |
aggtcacgacgttcagccttgcaatttcgacattt |
435 |
Q |
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| T |
4800935 |
aggtcacgacgtccagccttgcaatttcgacattt |
4800901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 47770427 - 47770350
Alignment:
| Q |
358 |
tgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt |
435 |
Q |
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| T |
47770427 |
tgaaattaaactcacacaattacgagatttcggattcgaatccaggtcacgacgtccgagcttgcaatttcgacattt |
47770350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 34383264 - 34383339
Alignment:
| Q |
139 |
ttctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat |
214 |
Q |
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| T |
34383264 |
ttctaaagtgaacaactcactttagagtctaaagtgagtaatattaatcgttaatattaaaattaaaagtagatat |
34383339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 13887284 - 13887196
Alignment:
| Q |
347 |
tagtaagcaactgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt |
435 |
Q |
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| T |
13887284 |
tagtaatccactgaaattaaactcatacaactgtgaggttccgggttcgaacctgggtcacgacgtccggtcttgcaagttcggcattt |
13887196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 37757430 - 37757504
Alignment:
| Q |
140 |
tctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat |
214 |
Q |
| |
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| T |
37757430 |
tctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatat |
37757504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 37763178 - 37763252
Alignment:
| Q |
140 |
tctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat |
214 |
Q |
| |
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| T |
37763178 |
tctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatat |
37763252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 27229516 - 27229581
Alignment:
| Q |
370 |
cacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt |
435 |
Q |
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| T |
27229516 |
cacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacattt |
27229581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 5385444 - 5385363
Alignment:
| Q |
356 |
actgaaattaaactcacaca--actatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt |
435 |
Q |
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|||||||||||||||||||| ||| |||| | ||| || |||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
5385444 |
actgaaattaaactcacacacaactgtgaggtcccgggttcgaacctgggtcacgacgtccagccttgcaatttcggcattt |
5385363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 29581069 - 29581140
Alignment:
| Q |
360 |
aaattaaactcacaca--actatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcg |
429 |
Q |
| |
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|||||||||||||||| ||| |||| | |||| || |||||||||||||||||| | |||||||||||||| |
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| T |
29581069 |
aaattaaactcacacacaactgtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaatttcg |
29581140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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