View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7102_high_5 (Length: 350)
Name: NF7102_high_5
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_high_5 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 9526303 - 9526633
Alignment:
| Q |
1 |
tggtcttctgcaaactcaactgcatcttcagtaggaaccattctcaagtcaacaaggtcacctttgttaccaactagcatgatcacaattgagttatctg |
100 |
Q |
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| T |
9526303 |
tggtcttctgcaaactcaactgcatcttcagtagggaccattctcaaatcaacaaggtcacctttgttaccaactagcatgatcacaattgagttatctg |
9526402 |
T |
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| Q |
101 |
catgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagta |
200 |
Q |
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| T |
9526403 |
catgtgctctaagttcctcaacccatttagcaacatgatcaaaagattgccttttggttatgtcatatactagcattgctcctaatgcacctctatagta |
9526502 |
T |
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| Q |
201 |
tgcacttgtaacagccctgtacctatatcagcaacaaaatttacatgtatatctaatatgtcaaaagaatttatctggagtctacacttaaatgatcagg |
300 |
Q |
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| T |
9526503 |
tgcacttgttacagctctgtacctatatcaacaacataatttacatgtatatatcatatgtcaaaagaatttatctgcagtatacacataaatgatcagg |
9526602 |
T |
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| Q |
301 |
ggttattttttgatttagccggggcagattc |
331 |
Q |
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| T |
9526603 |
ggttattttttgatttaaccggggcagattc |
9526633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 48932348 - 48932172
Alignment:
| Q |
52 |
acaaggtcacctttgttaccaactagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtc |
151 |
Q |
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| T |
48932348 |
acaagatcacctttgttaccaattagcatgatcacgatggagttgtcggcgtgtgaccgtagttcctcaatccatctagctacatgatcaaacgtttgtc |
48932249 |
T |
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| Q |
152 |
ttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatat |
228 |
Q |
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| T |
48932248 |
ttttagttatgtcatacaccagcatggcccctaatgctcctctgtagtatgcacttgtaaccgctctgtacctatat |
48932172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 14479 - 14388
Alignment:
| Q |
136 |
tgatcaaatgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctata |
227 |
Q |
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| T |
14479 |
tgatcgaatgattgacgttttgtcatgtcgtaaactaacattgccccaactgcacctcgatagtatgcactagtaactgccctgtacctata |
14388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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