View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7102_high_7 (Length: 303)
Name: NF7102_high_7
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 13977027 - 13977296
Alignment:
| Q |
16 |
tatggtgttagtaggaggcttttatctgatgatggtattccttcatgggttagtgacgggcataggcatcttcttgctggtggaaatgttaaagctaatg |
115 |
Q |
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| T |
13977027 |
tatggtgttagtaggaggcttttatctgatgatggtattccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaagctgatg |
13977126 |
T |
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| Q |
116 |
ctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctcaaaatgcagtaccttttgtgatccatgttaa |
215 |
Q |
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| T |
13977127 |
ctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctcaaaatgcagtaccttttgtgatccatgttaa |
13977226 |
T |
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| Q |
216 |
ggctggtgtttataaagagactgttaatgttgctaaggaaatgagttatgttactgtcattggcgatggt |
285 |
Q |
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| T |
13977227 |
ggctggtgtttataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
13977296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 13966859 - 13967128
Alignment:
| Q |
16 |
tatggtgttagtaggaggcttttatctgatgatggtattccttcatgggttagtgacgggcataggcatcttcttgctggtggaaatgttaaagctaatg |
115 |
Q |
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| T |
13966859 |
tatggtgttagtaggaggcttttatctgatgatggtattccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaagctaatg |
13966958 |
T |
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| Q |
116 |
ctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctcaaaatgcagtaccttttgtgatccatgttaa |
215 |
Q |
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| T |
13966959 |
ctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctacaaatgcagcaccttttgtgatctatgttaa |
13967058 |
T |
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| Q |
216 |
ggctggtgtttataaagagactgttaatgttgctaaggaaatgagttatgttactgtcattggcgatggt |
285 |
Q |
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| T |
13967059 |
ggctggtgtatataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
13967128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 13959326 - 13959557
Alignment:
| Q |
54 |
tccttcatgggttagtgacgggcataggcatcttcttgctggtggaaatgttaaagctaatgctgttgtggctcaagatgggagtggacagtttaagaca |
153 |
Q |
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| T |
13959326 |
tcctttatgggttagcgaagggcaaagacgacttcttgctgaagcaactgttaaacctaatgttgttgtggctcaagatggaagtggacagtttaagaca |
13959425 |
T |
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| Q |
154 |
ttaactgatgctcttaagactgttcctcctcaaaatgcagtaccttttgtgatccatgttaaggctggtgtttataaagagactgttaatgttgctaagg |
253 |
Q |
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| T |
13959426 |
ttaactgatgctattaagactgttcctgccaataatgcacagaattttgtgatttatgttaaggaaggtgtttataatgagactgttaatgtgcctaagg |
13959525 |
T |
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| Q |
254 |
aaatgagttatgttactgtcattggcgatggt |
285 |
Q |
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| T |
13959526 |
atatggcttttgttaccatcattggtgatggt |
13959557 |
T |
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