View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7102_low_1 (Length: 539)

Name: NF7102_low_1
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7102_low_1
NF7102_low_1
[»] chr2 (2 HSPs)
chr2 (32-522)||(33564610-33565087)
chr2 (401-435)||(4800901-4800935)
[»] chr3 (1 HSPs)
chr3 (358-435)||(47770350-47770427)
[»] chr7 (5 HSPs)
chr7 (139-214)||(34383264-34383339)
chr7 (347-435)||(13887196-13887284)
chr7 (140-214)||(37757430-37757504)
chr7 (140-214)||(37763178-37763252)
chr7 (370-435)||(27229516-27229581)
[»] chr8 (1 HSPs)
chr8 (356-435)||(5385363-5385444)
[»] chr4 (1 HSPs)
chr4 (360-429)||(29581069-29581140)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 522
Target Start/End: Original strand, 33564610 - 33565087
Alignment:
Q  32 aaaaaagtgtgaatttttatttttattataaatataaatagttaatttaaattgtcttcacaaaacaattataatcttttgggtgttaaatgattcggat 131  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  33564610 aaaaaaggatgaatttttatttttattataaatataaatagttaatttaaattttcttcacaaaacaattataatcttttgggtgttaaatgatttggat 33564709  T
Q  132 tcggttcttctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatatcataataaaccataaat 231  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33564710 tcggttcttctaaagtgaacaacttatttgaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatatcataataaatcataaat 33564809  T
Q  232 tagctacaatagcaacatttggttttctcaccttatactattcactttagatggtaaaaatttgagcaactgaggtaattgttgtaaaaga-----annn 326  Q
    ||||||||||| |||||||||||||||||||||||||||||  |      |  |||||||||||||| |||||||||  ||||||||||||             
T  33564810 tagctacaataacaacatttggttttctcaccttatactatcta------aaagtaaaaatttgagcgactgaggta--tgttgtaaaagattttttttt 33564901  T
Q  327 nnnnncggttttagatcaaatagtaagcaactgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatt 426  Q
          |||||||||| ||||||||||| | ||||||||||||||||||||||| || | |||| || |||||||||||||||||| ||||||| |||||    
T  33564902 ttttttggttttagattaaatagtaagccattgaaattaaactcacacaactataaggtctcgggttcgaacctaggtcacgacgtccagccttacaatt 33565001  T
Q  427 tcgacattttttacaaagtcataaaaggatttataatttgcatgttgaataataaaatattttactcggataagttggatcatgtaggtatccctt 522  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33565002 tcgacattttttacaaagtc----------ttataatttgcatgttgaataataaaatattttactcggataagttggatcatgtaggtatccctt 33565087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 4800935 - 4800901
Alignment:
Q  401 aggtcacgacgttcagccttgcaatttcgacattt 435  Q
    |||||||||||| ||||||||||||||||||||||    
T  4800935 aggtcacgacgtccagccttgcaatttcgacattt 4800901  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 47770427 - 47770350
Alignment:
Q  358 tgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt 435  Q
    ||||||||||||||||||| || ||||||||||||| ||| | |||||||||||| |   ||||||||||||||||||    
T  47770427 tgaaattaaactcacacaattacgagatttcggattcgaatccaggtcacgacgtccgagcttgcaatttcgacattt 47770350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 34383264 - 34383339
Alignment:
Q  139 ttctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat 214  Q
    ||||||||||||||||| ||||||  || ||||||| |||||||||||||||| | | ||||||||| ||||||||    
T  34383264 ttctaaagtgaacaactcactttagagtctaaagtgagtaatattaatcgttaatattaaaattaaaagtagatat 34383339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 13887284 - 13887196
Alignment:
Q  347 tagtaagcaactgaaattaaactcacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt 435  Q
    |||||| | |||||||||||||||| |||||| |||| || ||| || |||||| ||||||||||| | | ||||||| |||| |||||    
T  13887284 tagtaatccactgaaattaaactcatacaactgtgaggttccgggttcgaacctgggtcacgacgtccggtcttgcaagttcggcattt 13887196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 37757430 - 37757504
Alignment:
Q  140 tctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat 214  Q
    |||||| ||| ||||| ||||||  ||||||||||  |||||| |||||||| || |||||| ||||||||||||    
T  37757430 tctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatat 37757504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 37763178 - 37763252
Alignment:
Q  140 tctaaagtgaacaacttactttaaggtgtaaagtgcgtaatattaatcgttagtttaaaaattaaaggtagatat 214  Q
    |||||| ||| ||||| ||||||  ||||||||||  |||||| |||||||| || |||||| ||||||||||||    
T  37763178 tctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatat 37763252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 27229516 - 27229581
Alignment:
Q  370 cacacaactatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt 435  Q
    ||||||||| |||| |  ||| || ||||| |||||||||||| | ||||||||||||||||||||    
T  27229516 cacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacattt 27229581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 5385444 - 5385363
Alignment:
Q  356 actgaaattaaactcacaca--actatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcgacattt 435  Q
    ||||||||||||||||||||  ||| |||| |  ||| || |||||| ||||||||||| |||||||||||||||| |||||    
T  5385444 actgaaattaaactcacacacaactgtgaggtcccgggttcgaacctgggtcacgacgtccagccttgcaatttcggcattt 5385363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 29581069 - 29581140
Alignment:
Q  360 aaattaaactcacaca--actatgagatttcggatttgaacctaggtcacgacgttcagccttgcaatttcg 429  Q
    ||||||||||||||||  ||| |||| | |||| || |||||||||||||||||| | ||||||||||||||    
T  29581069 aaattaaactcacacacaactgtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaatttcg 29581140  T

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