View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7102_low_2 (Length: 538)
Name: NF7102_low_2
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7917137 - 7917234
Alignment:
| Q |
19 |
caggtttgagtcaacctgtgtgctgtgatagagtcttgggtcagcaaaggtgcaaggttaaaaattgaggatattcaaattatgtataaactacgaaa |
116 |
Q |
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| T |
7917137 |
caggtttgagtcaacctgtgtgctttgatagagtcttggttcagcaaaggtgcaaggttaaaaattgaggatattcaaattatgtataaactacgaaa |
7917234 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 445 - 519
Target Start/End: Complemental strand, 7935102 - 7935028
Alignment:
| Q |
445 |
ctctcattccctccaagggtttccaatattgagaccaacaagccaaattgaattgacttggttaatgaagattgt |
519 |
Q |
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| T |
7935102 |
ctctcattccctcaaagtgcttccaatattgagaccaacaagccatattgaattgacttggttaatgaagattgt |
7935028 |
T |
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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 7919972 - 7920047
Alignment:
| Q |
302 |
tcaaattcaaaatacaaagcctgaacaagataatcatgttatttttaatccaacgatttgtattgatggttgcatgatt |
380 |
Q |
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| T |
7919972 |
tcaaattcaaaatacaaagtcataacaagataat---gttatttttaatcatacgatatatattgacggttgcatgatt |
7920047 |
T |
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