View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7102_low_6 (Length: 339)
Name: NF7102_low_6
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 549845 - 549541
Alignment:
| Q |
17 |
gccatgattccttttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcct |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549845 |
gccatgattcctt--gtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcct |
549748 |
T |
|
| Q |
117 |
cattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549747 |
cattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaa |
549648 |
T |
|
| Q |
217 |
gaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
549647 |
gaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaacttgtt |
549548 |
T |
|
| Q |
317 |
caaaaac |
323 |
Q |
| |
|
||||||| |
|
|
| T |
549547 |
caaaaac |
549541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 23422783 - 23423087
Alignment:
| Q |
17 |
gccatgattccttttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcct |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422783 |
gccatgattcctt--gtccaggactaagccacttaattccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcct |
23422880 |
T |
|
| Q |
117 |
cattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23422881 |
cattccaactcttggttctcctacaccatctaccaaatccatcttaaactctcttccaccaaacattgattttacattccttcctcatatcaatatccag |
23422980 |
T |
|
| Q |
217 |
gaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422981 |
gaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaacttgtt |
23423080 |
T |
|
| Q |
317 |
caaaaac |
323 |
Q |
| |
|
||||||| |
|
|
| T |
23423081 |
caaaaac |
23423087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University