View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7102_low_9 (Length: 296)
Name: NF7102_low_9
Description: NF7102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7102_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 51167512 - 51167807
Alignment:
| Q |
1 |
gaaagaaaaaagtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51167512 |
gaaagaaaaaagtaaaggagttgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
51167611 |
T |
|
| Q |
101 |
gaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcggaaggcaatcacaaaacttgatcaattggatcttgaag |
200 |
Q |
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| T |
51167612 |
gaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcaaaaggcaatcacaaaacttgatcaattggatcttgaag |
51167711 |
T |
|
| Q |
201 |
aaccaagtgaaaagtttgataaatcggcatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgattctccacgtgcggtcc |
296 |
Q |
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| T |
51167712 |
aaccaaatgaaaagtttgataaatcggcatttgaagttatgcctaaagtctccgatgaccagaccataaacttgtgtgatcctccacgtgcggtcc |
51167807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 65514 - 65809
Alignment:
| Q |
1 |
gaaagaaaaaagtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65514 |
gaaagaaaaaagtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
65613 |
T |
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| Q |
101 |
gaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcggaaggcaatcacaaaacttgatcaattggatcttgaag |
200 |
Q |
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| T |
65614 |
gaactatctgaaagaggttcacgctcagaaaagcatgatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaag |
65713 |
T |
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| Q |
201 |
aaccaagtgaaaagtttgataaatcggcatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgattctccacgtgcggtcc |
296 |
Q |
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| T |
65714 |
aaccaaatgaagagtttgataaatcgaaatttgaagttatgcctaaagtctccaatgaccagactataaacttgtgtgatcctccacgtgcggtcc |
65809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 372 - 660
Alignment:
| Q |
1 |
gaaagaaaaaagtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
100 |
Q |
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|||||| |||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
372 |
gaaagacaaaagtaaaggacttgcaattgaagaccatgaagaaggcagaaaccaagcttcaagtacttcattgtttaatagtattatggttgagtctctt |
471 |
T |
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| Q |
101 |
gaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcggaaggcaatcacaaaacttgatcaattggatcttgaag |
200 |
Q |
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|| |||||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
472 |
gagctatctgaaagaggttcacgatcgataaaacatcatgatattgcaattcaagctttgcggaagg-aatcacaaaacttgatcaattggatattgaag |
570 |
T |
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| Q |
201 |
aaccaagtgaaaagtttgataaatcggcatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgattctccacgtg |
290 |
Q |
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| |||| |||| |||||| ||| || |||||||||||||||||||||||| | ||||| |||||||| || |||||| | ||||||| |
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| T |
571 |
agccaaatgaagagtttgttaattcaatgtttgaagttatgcctaaagtctccgacgaccaaaccataaatttatgtgatccaccacgtg |
660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 19330432 - 19330677
Alignment:
| Q |
23 |
gcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctgaaagaggttcac |
122 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| | |
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| T |
19330432 |
gcaattgaagaccttgaggaaggtagaaacagagcttcaagtacttcattgtttaatagtattatggttgagtttcttgaattatctgaaagaggttcgc |
19330531 |
T |
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| Q |
123 |
gctcagaaaagcatcatggtattgcaattcaagctttgcggaaggcaatcacaaaacttgatcaattggatcttgaagaaccaagtgaaaagtttgataa |
222 |
Q |
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| ||| ||||| |||||| ||||||||||||| |||| ||||| | ||||||| |||| |||| |||||| |||||||||||| |||| ||||||||| |
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| T |
19330532 |
gatcaaaaaagtatcatgatattgcaattcaaactttacggaaagaaatcacagaactagatcgtttggatattgaagaaccaaatgaagggtttgataa |
19330631 |
T |
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| Q |
223 |
atcggcatttgaagttatgcctaaagtctccaatgaccagaccata |
268 |
Q |
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||| ||||| | |||||||||||||| ||||| ||| ||| |||| |
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| T |
19330632 |
ttcgacatttaaggttatgcctaaagtatccaacgactagatcata |
19330677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 48776015 - 48776204
Alignment:
| Q |
1 |
gaaagaaaaaagtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctctt |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||| || ||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48776015 |
gaaagacaaaagtaaaggacttgcaattgaagaccttgaagaaggtagaaaccgagcctcaagtacttcattgtttaatagtattatggttgagtctctt |
48776114 |
T |
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| Q |
101 |
gaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcggaaggcaatcacaaaacttgatcaattg |
190 |
Q |
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|| |||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
48776115 |
gagctatctgaaagaggttcacgatcgaaaaaacatcatgatattgcaattcaagctttgcggaaggcgatcgcaaaacttgatcaattg |
48776204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 48776205 - 48776238
Alignment:
| Q |
74 |
tttaatagtattatggttgagtctcttgaactat |
107 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
48776205 |
tttaatagtattatggttgagtctcttgagctat |
48776238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 44884477 - 44884330
Alignment:
| Q |
55 |
agcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctgaaagaggttcacgctcagaaaagcatcatggtattgcaattcaa |
154 |
Q |
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|||||| || |||||||| ||||||||| |||||||| |||||||| | |||||||||| |||||| ||| |||| ||||||| ||||||||||||| |
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| T |
44884477 |
agcttctagcacttcattgtttaatagtgttatggttcgtcctcttgaattttctgaaagagcttcacgatcaaaaaaacatcatgatattgcaattcaa |
44884378 |
T |
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| Q |
155 |
gctttgcggaaggcaatcacaaaacttgatcaattggatcttgaagaa |
202 |
Q |
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||||| || ||||| |||||||||||| | | || ||||||||| |
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| T |
44884377 |
tgtttgcaaaatgcaattgcaaaacttgatctaatagagcttgaagaa |
44884330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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