View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7103_high_10 (Length: 259)

Name: NF7103_high_10
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7103_high_10
NF7103_high_10
[»] chr3 (2 HSPs)
chr3 (38-152)||(15796568-15796682)
chr3 (38-152)||(4324452-4324566)
[»] chr1 (3 HSPs)
chr1 (38-153)||(32645503-32645618)
chr1 (42-155)||(24607615-24607730)
chr1 (61-113)||(51811221-51811273)
[»] chr8 (3 HSPs)
chr8 (38-152)||(31104101-31104215)
chr8 (38-155)||(43603725-43603842)
chr8 (67-104)||(28133715-28133752)
[»] chr4 (6 HSPs)
chr4 (38-152)||(440242-440356)
chr4 (38-155)||(4655948-4656065)
chr4 (38-154)||(3504514-3504630)
chr4 (37-107)||(12200475-12200545)
chr4 (156-210)||(11103473-11103527)
chr4 (216-244)||(11102036-11102064)
[»] chr5 (2 HSPs)
chr5 (38-155)||(23357025-23357142)
chr5 (38-155)||(32891543-32891659)
[»] chr7 (1 HSPs)
chr7 (38-154)||(23680408-23680524)
[»] chr6 (1 HSPs)
chr6 (38-155)||(2025770-2025888)
[»] chr2 (1 HSPs)
chr2 (59-124)||(39238019-39238084)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 15796568 - 15796682
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15796568 tttttcacggtgcacgctacccaatatcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 15796667  T
Q  138 gtattccaaacacat 152  Q
    |||||||||||||||    
T  15796668 gtattccaaacacat 15796682  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 4324566 - 4324452
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4324566 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 4324467  T
Q  138 gtattccaaacacat 152  Q
    |||||||||||||||    
T  4324466 gtattccaaacacat 4324452  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 32645503 - 32645618
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||     
T  32645503 tttttcacggtgcacgctatccaatgtcacttttaccgtgattttatgaagctggaaattccaacttttgcctagacgtgcttttttgagctttccaccg 32645602  T
Q  138 gtattccaaacacata 153  Q
    ||||||||||||||||    
T  32645603 gtattccaaacacata 32645618  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 24607615 - 24607730
Alignment:
Q  42 tcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgc--ttttttgagctttccacccgt 139  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||  ||||| |||| ||    
T  24607615 tcacggttcacgcttcccaatgttacttttaccgtgactttatgaagctgaaaattccagcttttgcctagacgtgcgttttttttggctttgcaccggt 24607714  T
Q  140 attccaaacacatact 155  Q
    ||||||||||||||||    
T  24607715 attccaaacacatact 24607730  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 51811221 - 51811273
Alignment:
Q  61 atgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctaga 113  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  51811221 atgtcacttttaccgtgactttatgaagctagaaattccggctttttcctaga 51811273  T

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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 31104215 - 31104101
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  31104215 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcttagaagtgcttttttgagctttccaccg 31104116  T
Q  138 gtattccaaacacat 152  Q
    |||||||||||||||    
T  31104115 gtattccaaacacat 31104101  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 43603725 - 43603842
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  43603725 tttttcacgatgcacgctatccaatgtcacttttagcgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 43603824  T
Q  138 gtattccaaacacatact 155  Q
    ||||| ||||||||||||    
T  43603825 gtatttcaaacacatact 43603842  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 28133715 - 28133752
Alignment:
Q  67 cttttaccgtgattttatgaagctggaaattccagctt 104  Q
    ||||||||||||||||||||||||||||| || |||||    
T  28133715 cttttaccgtgattttatgaagctggaaactctagctt 28133752  T

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Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 440242 - 440356
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  440242 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 440341  T
Q  138 gtattccaaacacat 152  Q
    |||||||||||||||    
T  440342 gtattccaaacacat 440356  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 4656065 - 4655948
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||     
T  4656065 tttttcacggtgcacgctacataatgtcacttttacagtgattttatgaagctgaaaattccagattttgcctaaaagtgcttttttgagctttccaccg 4655966  T
Q  138 gtattccaaacacatact 155  Q
    ||||||||||||||||||    
T  4655965 gtattccaaacacatact 4655948  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 3504514 - 3504630
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||     
T  3504514 ttttttacggtgcacgctacccaatgtcacttttactatgattttatgaagctgaaaatctcagcttttgcctagaagtgcttttttgagctttccaccg 3504613  T
Q  138 gtattccaaacacatac 154  Q
    |||||||||||||||||    
T  3504614 gtattccaaacacatac 3504630  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 12200545 - 12200475
Alignment:
Q  37 atttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttg 107  Q
    |||||| |||||| ||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12200545 attttttacggtgtacgttttccaatgtcacttttaccgtgactttatgaagctggaaattccagcttttg 12200475  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 11103527 - 11103473
Alignment:
Q  156 gagtggtttaactatttatcactgtgatagggcaatggttaagtttttagtctta 210  Q
    |||||||||| | ||||||||||||||||||| |||||||  |||||||||||||    
T  11103527 gagtggtttagccatttatcactgtgatagggaaatggttcggtttttagtctta 11103473  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 11102064 - 11102036
Alignment:
Q  216 ttgtatgaaagtatttccttgatagtaat 244  Q
    |||||||||||||||||||||||||||||    
T  11102064 ttgtatgaaagtatttccttgatagtaat 11102036  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 23357025 - 23357142
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||     
T  23357025 tttttcacggtgcacgctacccaatatcacttttactatgattttatgaagctgaaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 23357124  T
Q  138 gtattccaaacacatact 155  Q
    ||||||||||||||||||    
T  23357125 gtattccaaacacatact 23357142  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 32891543 - 32891659
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagt-gcttttttgagctttccacc 136  Q
    |||||||||||||||| |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |||||| ||||    
T  32891543 tttttcacggtgcacgttttccaatgtc--ttttaccgtgattttatgaagctggaaattccagcttttgcctaaacgtgggtttttttagctttgcacc 32891640  T
Q  137 cgtattccaaacacatact 155  Q
     ||||||||||||||||||    
T  32891641 ggtattccaaacacatact 32891659  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 23680524 - 23680408
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 137  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||| || ||||||||| |||||||||     
T  23680524 ttttttacggtgcacgctacccaatgtcacttttatcgtgattttatgaagctggaaattctaacttttacctagacgtacttttttgaactttccacca 23680425  T
Q  138 gtattccaaacacatac 154  Q
    |||||||||||||||||    
T  23680424 gtattccaaacacatac 23680408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 2025770 - 2025888
Alignment:
Q  38 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtg-cttttttgagctttccacc 136  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| |||||||| |||| |||  ||||||||||||||||||    
T  2025770 tttttcacggtgcacgttactcaatatcacttttactgtgattttatgaagctggaaattcctgcttttgcttagacgtgttttttttgagctttccacc 2025869  T
Q  137 cgtattccaaacacatact 155  Q
     ||||||||||||||||||    
T  2025870 ggtattccaaacacatact 2025888  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 39238019 - 39238084
Alignment:
Q  59 caatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgctttttt 124  Q
    |||||| ||||||||||||| |||||||||||| |||| |||||||||||||||| |||| |||||    
T  39238019 caatgtgacttttaccgtgactttatgaagctgaaaataccagcttttgcctagacgtgcattttt 39238084  T

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