View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_high_12 (Length: 241)
Name: NF7103_high_12
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 24655697 - 24655934
Alignment:
| Q |
3 |
gagtttggtgttataacacagatgcttggatgtatgataacaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgtttt |
102 |
Q |
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| T |
24655697 |
gagtttggtgttataacacagatgcttggatgtcagataacaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgtttt |
24655796 |
T |
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| Q |
103 |
ttgggtttcactttggatcttgagcatcttgtgctaagatgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttagttttacgtc |
202 |
Q |
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| T |
24655797 |
ttgggtttcactttggatcttgagcatcttgtgctaagatgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttaattttacgtc |
24655896 |
T |
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| Q |
203 |
attattggattatgttactgaggtagaatcaatgtact |
240 |
Q |
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| T |
24655897 |
attattggattatgttactgaggtagaatcaatgtact |
24655934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 29416657 - 29416470
Alignment:
| Q |
33 |
tgtatgataacaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatctt |
132 |
Q |
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| T |
29416657 |
tgtaagatagcaattcataaagaaaaccttcttccttttggaggaaaaagtatttaataggcttt--tttctgggtttcactttggatcttgagcatctt |
29416560 |
T |
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| Q |
133 |
gtgctaagatgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttagttttacgtcattattggattatgttactgaggtagaatc |
232 |
Q |
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| T |
29416559 |
gtgctaggatgtgtttctaacta-----------tttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatc |
29416471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 6118120 - 6118161
Alignment:
| Q |
49 |
ataaggaaaaccttcttccttttgaaggaaaaagtatttaat |
90 |
Q |
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| T |
6118120 |
ataaggaaaaccttctttcttttgaaggaattagtatttaat |
6118161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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