View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_high_2 (Length: 457)
Name: NF7103_high_2
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 44392358 - 44392772
Alignment:
| Q |
13 |
aatataagtgcaaagatgagagtggttactgatggtagtgctatgcatgtacatttcggctagcttctattattgcttcacaaatttgtcttgttgccgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392358 |
aatataagtgcaaagatgagagtggttactgatggtagtgctatgcatgtacatttcggctagcttctattattgcttcacaaatttgtcttgttgccgc |
44392457 |
T |
|
| Q |
113 |
atgcacacaagtacacaactcaaaatatnnnnnnnnnnnnnnnnnnnnnttcaattattctaaaattaattacaatttacaaaagttcatatcgaatcat |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392458 |
atgcacacaagtacacaactcaaaatatgaagaagaa------------ttcaattattctaaaattaattacaatttacaaaagttcatatcgaatcat |
44392545 |
T |
|
| Q |
213 |
cgatccaatccaactacagctttaatcagagctaaaataatacgcaaaaagtaagtacaatagagctttcttgctagcttagtgtatttcttttcaatca |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44392546 |
cgatccaatccaactacagctttaattagagctaaaataatacgcaaaaagtaagtacaatagagctttcttgcttgcttagtgtatttcttttcaatca |
44392645 |
T |
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| Q |
313 |
ttttcgtttttatcctccaagacaaactatatattcctttgtttatttttaataaggaagaattggaaaggttttgagaccattttgttgtaacaacagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392646 |
ttttcgtttttatcctccaagacaaactatatattcctttatttatttttaataaggaagaattggaaaggttttgagaccattttgttgtaacaacagt |
44392745 |
T |
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| Q |
413 |
gaaacttgtgtctttttgttgaatact |
439 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44392746 |
gaaacttgtgtctttttgttgaatact |
44392772 |
T |
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