View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_1 (Length: 712)
Name: NF7103_low_1
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 181269 - 180577
Alignment:
| Q |
1 |
tgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
181269 |
tgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacata |
181170 |
T |
|
| Q |
101 |
taatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
181169 |
taatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgcaattcaagat |
181070 |
T |
|
| Q |
201 |
atgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
181069 |
atgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatttggggt |
180970 |
T |
|
| Q |
301 |
agggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180969 |
agggagggtaatagagccaacatgtgaaatattcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattg |
180870 |
T |
|
| Q |
401 |
ttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgt |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
180869 |
ttcagatttgatgttatatgatgactggctctagtgtcgaacacccagttaggagcagccgaatgtgaagtagaagcgaaatttgccattggttgattgt |
180770 |
T |
|
| Q |
501 |
tgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcg |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
180769 |
tgcgttgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaagtctatttccacatgagttgaaacctcg |
180670 |
T |
|
| Q |
601 |
acctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaattgg |
693 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
180669 |
acctctaccacgatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccggggatggaattgg |
180577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 1701696 - 1701004
Alignment:
| Q |
1 |
tgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
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|
| T |
1701696 |
tgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgatattgagactta |
1701597 |
T |
|
| Q |
101 |
taatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1701596 |
ggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtgaaattcaagat |
1701497 |
T |
|
| Q |
201 |
atgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
1701496 |
atgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtagtattgggggt |
1701397 |
T |
|
| Q |
301 |
agggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
1701396 |
agggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggagtgcagctgcatattg |
1701297 |
T |
|
| Q |
401 |
ttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgt |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1701296 |
ttcagatttgatgttatatgatgactggctcctgtgtcgaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttgccactggttgattgt |
1701197 |
T |
|
| Q |
501 |
tgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcg |
600 |
Q |
| |
|
|||| || ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1701196 |
tgcgttgtagcagctgaggacaatacttagcaatatggccaagcaaagagcagagttgacatcttggtggaggtctatttccacgtgagttgaaacctcg |
1701097 |
T |
|
| Q |
601 |
acctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaattgg |
693 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
1701096 |
acctctaccacgatagttagacccacgagtattggatccatggtgctgggattgtttagagaaattgttaccacgtcctgtggatggaattgg |
1701004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 455
Target Start/End: Original strand, 26593053 - 26593191
Alignment:
| Q |
317 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgtta |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| | | |
|
|
| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttgtgctga |
26593152 |
T |
|
| Q |
417 |
tacgatgactggctccagtgtcaaacacccagttaggag |
455 |
Q |
| |
|
|| |||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
26593153 |
tatgatggctggccccagtatcaaacacccaattaggag |
26593191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 312 - 455
Target Start/End: Complemental strand, 5400124 - 5399981
Alignment:
| Q |
312 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
411 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| | |
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|
| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
5400025 |
T |
|
| Q |
412 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
455 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
5400024 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
5399981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 312 - 455
Target Start/End: Complemental strand, 3541121 - 3540978
Alignment:
| Q |
312 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
411 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| | |
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|
| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
3541022 |
T |
|
| Q |
412 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
455 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
3541021 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
3540978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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