View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_11 (Length: 303)
Name: NF7103_low_11
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 38304439 - 38304725
Alignment:
| Q |
3 |
ggggagtgaccttgtacacattatgttcattcaatcggcacaaaagtatctctctcatgtgcaaatccttcaccttgaaatgccaaagaaaacaatcaat |
102 |
Q |
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| T |
38304439 |
ggggagtgaccttgtacacattatgttcattcaatcggcacaaaagtatctctctcatgtgcaaatccttcaccttgaaatgccaaagaaaacaatcaat |
38304538 |
T |
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| Q |
103 |
ggaaactttgttagtttgacaaaattgagaaacaaagatgagattttgtggaacatt-ggnnnnnnntaagaaatttcacaaatgtaagggtgaacaata |
201 |
Q |
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| T |
38304539 |
ggaaactttgttagtttgacaaaattgagaaacaaagatgagattttgtgggacattgggaaaaaaataagaaatttcacaaatgtaagggtgaacaata |
38304638 |
T |
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| Q |
202 |
tgtagagatgggagtagaaccaacatgtgaaataggaagagaattaatcactccttgagagacatagtccccctattacaccaaact |
288 |
Q |
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| T |
38304639 |
tgtagagatgggagtagaaccaacatgtgaaataggaagagaattaatcactccttgagagacatagtccccctattacaccaaact |
38304725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 19733422 - 19733558
Alignment:
| Q |
14 |
ttgtacacattatgttcattcaatcggcacaaaagtatctctctcatgtgcaaatccttcaccttgaaatgccaaagaaaacaatcaatggaaactttgt |
113 |
Q |
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| T |
19733422 |
ttgtacacattgtcttcattcattccgcgcagaagtacctccctcgtgcataaatccttcacctcgaaatgccaaggaaaaaattcaatagaaactttat |
19733521 |
T |
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| Q |
114 |
tagtttgacaaaattgagaaacaaagatgagattttg |
150 |
Q |
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| T |
19733522 |
tagtttgacataattgagagacagaaataagattttg |
19733558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 9145756 - 9145641
Alignment:
| Q |
5 |
ggagtgaccttgtacacattatgttcattcaatcggcacaaaagtatctctctcatgtgcaaatccttcaccttgaaatgccaaagaaaacaatcaatgg |
104 |
Q |
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||||||| | |||||||||||| ||||||||| | || || ||||||||| | | || | ||||||||||||| |||||||||| ||||| | ||||| | |
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| T |
9145756 |
ggagtgaacctgtacacattatcttcattcaacccgcgcagaagtatctcccccgtgcgtaaatccttcacctcgaaatgccaaggaaaaaattcaatag |
9145657 |
T |
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| Q |
105 |
aaactttgttagtttg |
120 |
Q |
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| T |
9145656 |
aaacattattagtttg |
9145641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 49815227 - 49815294
Alignment:
| Q |
180 |
acaaatgtaagggtgaacaatatgtagagatgggagtagaaccaacatgtgaaataggaagagaatta |
247 |
Q |
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| T |
49815227 |
acaaatgtaaatgtgaagaggatgtagagatggaagtagaatcaacatgtgaaataggaagagaatta |
49815294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 37702692 - 37702585
Alignment:
| Q |
13 |
cttgtacacattatgttcattcaatcggcacaaaagtatctctctcatgtgcaaatccttcaccttgaaatgccaaagaaaacaatcaatggaaactttg |
112 |
Q |
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|||||||||||||| ||||||||| | | || ||||||||| | | || | ||||||||||||| |||||||||| ||||| | ||||| ||||| || |
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| T |
37702692 |
cttgtacacattatcttcattcaacccacgcagaagtatctcccccgtgcgtaaatccttcacctcgaaatgccaaggaaaaaattcaatagaaacatta |
37702593 |
T |
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| Q |
113 |
ttagtttg |
120 |
Q |
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|||||||| |
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| T |
37702592 |
ttagtttg |
37702585 |
T |
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