View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_13 (Length: 250)
Name: NF7103_low_13
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 38304164 - 38304404
Alignment:
| Q |
10 |
aataatataacgcaataatgaaaattatctattgagtaaataaaattagacaatttctagaggataactactattgattgaggacttatagaattggatt |
109 |
Q |
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| T |
38304164 |
aataaaataacgcaataatgaaaattatctattgagtaaataaaattacacaatttctagatgataactactattgattgaggacttatagaattggatt |
38304263 |
T |
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| Q |
110 |
ttgtaaatctcattggaaagacaatcaagagatttatttgataaactaagnnnnnnnttgttgttggttttgagtgcatgtaaaattcttgttgaggagg |
209 |
Q |
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| T |
38304264 |
ttgtaaatctcattggaaagacaatcaagagatttatttgataaactaataaaaaaattgttgttggttttgagtgcatgtaaaattcttgttgaggagg |
38304363 |
T |
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| Q |
210 |
aatgtccacaacattgatgccacaatggtaatgtcggtaaa |
250 |
Q |
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| T |
38304364 |
aatgtccacaacattgatgccacaatggtaatgttggtaaa |
38304404 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 19733185 - 19733223
Alignment:
| Q |
59 |
acaatttctagaggataactactattgattgaggactta |
97 |
Q |
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| T |
19733185 |
acaatttctagaggataactactagtaattgaggactta |
19733223 |
T |
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