View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_17 (Length: 228)
Name: NF7103_low_17
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24656162 - 24655936
Alignment:
| Q |
1 |
tcaaaatcgatagattttaccaaattgtatatagtcatctttattgtgtgttcattttttaaagactagatagaagagtgatctaaattgagggtttact |
100 |
Q |
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| T |
24656162 |
tcaaaatcgatagattttaccaaattgtatatagtcatctttattgtgtgttcattgtttaaagactagatagaagagtgatctaaattgagggtttact |
24656063 |
T |
|
| Q |
101 |
cgttaatgatattctgatagaacagtaaacaggtaaaaacagaactgtaatcaaaccttcacttataaaaagaaaatgatactttcatgagacagatgac |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24656062 |
cgttaatgatattctgatagaacagtaaacaagtaaaaacagaactgtaatcaaaccttcacttataaaaagaaaatgatactttcatgagacagatgac |
24655963 |
T |
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| Q |
201 |
attaacagtccattgtattctctgcat |
227 |
Q |
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| T |
24655962 |
attaacagtccattgtattctctgcat |
24655936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 29416360 - 29416453
Alignment:
| Q |
115 |
tgatagaacagtaaacaggtaaaaacagaactgtaatcaaaccttcacttataaaaagaaaatgatactttcatgagacagatgacattaacag |
208 |
Q |
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| T |
29416360 |
tgatagaacagtaaaccagtaaaaacagaactgtaatcaaatcttcacttataaaaagaaaatgatactttcatgagacagatgacattaacag |
29416453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 29415214 - 29415287
Alignment:
| Q |
43 |
attgtgtgttcattttttaaa-gactagatagaagagtgatctaaattgagggtttactcgttaatgatattct |
115 |
Q |
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|||||||||||||| |||||| ||||||| | ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
29415214 |
attgtgtgttcattatttaaaagactagacaaaagaggggtctaaattgagggtttactcgttaatgatattct |
29415287 |
T |
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