View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7103_low_18 (Length: 226)
Name: NF7103_low_18
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44989031 - 44989241
Alignment:
| Q |
1 |
tcatcttgatgcagaagaacctaaaagatataatttagaatccaaaatgaggaaacagatgctctgcgtaatacttggttgcggtaaacaagcacacaga |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44989031 |
tcatcttgattcagaagaacctgaaagatataaattagaatccaaaatgagaaaacagatgctctgcataatacttggttgcggtaaacaagcacacaga |
44989130 |
T |
|
| Q |
101 |
caaatatataagcaacaatggggaaaagtaaagaggaagaaagtatctaaacttcctattttaggttaccgctcttaaacta-tgcatggattcactata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
44989131 |
caaatatataagcaacaatggggaaaagtaaagaggaagaaagtatctaaacttcctattttaggttactgctcttaaactattgcatggattcactata |
44989230 |
T |
|
| Q |
200 |
gctaatggcat |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
44989231 |
gctaatggcat |
44989241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University