View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_2 (Length: 475)
Name: NF7103_low_2
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 61 - 390
Target Start/End: Original strand, 39825201 - 39825531
Alignment:
| Q |
61 |
ccatagtatatggtagtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaa |
160 |
Q |
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| T |
39825201 |
ccatagtatatggtagtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaa |
39825300 |
T |
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| Q |
161 |
gaaaaagg-acgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactcatcatgaataaactcatatcccgaaaaaacata |
259 |
Q |
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| T |
39825301 |
gaaaaagggacgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactgatcatgaataaactcatatcccgaaaaaacata |
39825400 |
T |
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| Q |
260 |
tttgaagtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaag |
359 |
Q |
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| T |
39825401 |
tttgaagtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaag |
39825500 |
T |
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| Q |
360 |
agaaagatacccttttcttctgaggttagga |
390 |
Q |
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| T |
39825501 |
agaaagatacccttttcttctgaggttagga |
39825531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39825149 - 39825191
Alignment:
| Q |
1 |
acgtcaaagtcctttatattgaggtagcggaccatagataatt |
43 |
Q |
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| T |
39825149 |
acgtcaaaatcctttatattgcggtagcggaccatagataatt |
39825191 |
T |
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