View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7103_low_4 (Length: 438)
Name: NF7103_low_4
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_4 |
 | |
|
| [»] scaffold0168 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0168 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Complemental strand, 25513 - 25109
Alignment:
| Q |
15 |
tagtatgagttgaccatggtggcattttgaaagttggcaaaatctttgacagcaaaagtaagataagagaattggacagtaaatgacaagaaaaaatcga |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
25513 |
tagtatgagttgacaatggtggcattttgaaagttggcaacatctttgacagctaaagtaagataagagaattggacagtacatgaaaagaaaaaatcga |
25414 |
T |
|
| Q |
115 |
acaacaaaagagagagaagtaccatcttgacgtgcatttccatcggcatcaactggagttggttctaagatgttcattgagtttgcaacaagatcatcaa |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25413 |
acaatgaaagagagagaagtaccatcttgacgtgcatttccatcggcatcaactggagttggttctaagatgttcatcgagtttgcaacaagatcatcaa |
25314 |
T |
|
| Q |
215 |
tacgcgatatgttaagcatacgcatgtgactatttttatcctccactcgaggtacatatagttttttaccacctgcatttggtattgataaataaaactc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
25313 |
tacgcgatatgttaagcatacgcatgtgactatttttatcctccactcgaggtacatatagttttttatcacctgcatttgatattgataaataaaactc |
25214 |
T |
|
| Q |
315 |
attgattttggacacatggaataaaaattggccaacaaactatgaaacactgaagcacggatagacacgacacagattgataagccgtcacccataatac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||| |
|
|
| T |
25213 |
attgattttggacacatggaataaaaattggccaacaaactatgaaacactgaagcacggatagacacgacacggactgataagccgacacctataatac |
25114 |
T |
|
| Q |
415 |
gaacc |
419 |
Q |
| |
|
||||| |
|
|
| T |
25113 |
gaacc |
25109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University