View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_5 (Length: 431)
Name: NF7103_low_5
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 182 - 420
Target Start/End: Complemental strand, 13793524 - 13793282
Alignment:
| Q |
182 |
actcgtatgtaaaatttgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc----ttttg |
277 |
Q |
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| T |
13793524 |
actcgtatgtaaaaattgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttatcaaaccgcgtcataattttg |
13793425 |
T |
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| Q |
278 |
caccctttgatcgggggtccttgctacgtcactggactatggtaaatgccctggatcttgaaaaagctatgtgttatagataaagacaaggctctatatc |
377 |
Q |
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| T |
13793424 |
caccctttgatcggggatccttgctacgccactggactttggtaaatgccctggatcttgaaaaagctctgtgttatagataaagacaaggctctatatc |
13793325 |
T |
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| Q |
378 |
aagaataatggcaactttgtgaaagtcaatgctatgtgttcat |
420 |
Q |
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| T |
13793324 |
aagaataatggcaactttgtgaaagtcaatgctacgtgttcat |
13793282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 13794971 - 13794916
Alignment:
| Q |
101 |
gattgtagacaaaggtgcaacatatcacacttgctatgacataaattggcttaaag |
156 |
Q |
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| T |
13794971 |
gattgtagacataggtgcaacatatcacacttgctatgacataaattggcttaaag |
13794916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 27912050 - 27912183
Alignment:
| Q |
6 |
tcaacaaatgaggtgaaagcaagcagctcagttgccaaaattggaggtaaattttatgctaaaaactctagtagtaaatatgatgatacaagctggattg |
105 |
Q |
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| T |
27912050 |
tcaacaaatgtgatgaaagcaagtagctcagttgctaacattggaggtaaattctatgctgatcattctagatgaaaatatgatgatacaagttggattg |
27912149 |
T |
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| Q |
106 |
tagacaaaggtgcaacatatcacacttgctatga |
139 |
Q |
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| T |
27912150 |
tagatacatgtgccacacatcacatttgccatga |
27912183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 33931915 - 33931993
Alignment:
| Q |
189 |
tgtaaaatttgttactgaataggtctaatt-gatcatatgtactcataaatataaacttcaaaattgactttaccaaacc |
267 |
Q |
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| T |
33931915 |
tgtaaaaattgttactaaataggtctaatttgaccatatgaactcataa-tataaacttgaaaattgacttgaccaaacc |
33931993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 16702979 - 16703044
Alignment:
| Q |
208 |
taggtctaattga-tcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc |
272 |
Q |
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| T |
16702979 |
taggtctaatttaatcagatgaactcataaatataaacttaaaaaatgactttaccaaaccgcgtc |
16703044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 34494057 - 34494122
Alignment:
| Q |
341 |
aagctatgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaa |
406 |
Q |
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| T |
34494057 |
aagctatgtgttatagatatagacaaggctctatatcaagattaaggtcaactctatggaagtcaa |
34494122 |
T |
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