View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7103_low_6 (Length: 393)
Name: NF7103_low_6
Description: NF7103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7103_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 208 - 375
Target Start/End: Original strand, 20755634 - 20755801
Alignment:
| Q |
208 |
aaggaattgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaa |
307 |
Q |
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| T |
20755634 |
aaggaattgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaa |
20755733 |
T |
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| Q |
308 |
gtctatccacaaaagtgcgagtggctgcctcagtaggatgaaattgatcccaaaagatatggtcttgt |
375 |
Q |
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| T |
20755734 |
gtttatccacaaaagtgcgtgtggctgcctcagtaggatgaaattgatcccaaaatatatggtcttgt |
20755801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 20755474 - 20755633
Alignment:
| Q |
13 |
gagaagaaccaccaacaaaaaagatatactaagagaagaataaaattgctaataaattaattgacataataccattgcatatttctccttctagcaatat |
112 |
Q |
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| T |
20755474 |
gagaagaatcaccaacaaaaaaaatatactaagagaagaataaaattgctaataaattaattgacataataccattgcacatttctccttctagcaatat |
20755573 |
T |
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| Q |
113 |
tttttagagtatcctcaaacaactacatagactaatttcttcaagaatatttcttaattg |
172 |
Q |
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| T |
20755574 |
tttttagagtatcctcaaacaactacatagactaatttcttcaagaatatttcttaattg |
20755633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 375
Target Start/End: Original strand, 20751136 - 20751296
Alignment:
| Q |
212 |
aattgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaagtct |
311 |
Q |
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| T |
20751136 |
aattgaagagactagtttaata---tttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtct |
20751232 |
T |
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| Q |
312 |
atccacaaaagtgcgagtggctgcctcagtaggatgaaattgatcccaaaagatatggtcttgt |
375 |
Q |
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| T |
20751233 |
atcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgt |
20751296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 20799511 - 20799619
Alignment:
| Q |
267 |
catattaataggagatgtgtattttgaaggtccattataaagtctatccacaaaagtgcgagtggctgcctcagtaggatgaaattgatcccaaaagata |
366 |
Q |
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| T |
20799511 |
catattaacaggagatgtgtattgtgacggtccattataaagtctatcgacaattatgcgagttactgcctcagtaggatggactgaatcccaaaagata |
20799610 |
T |
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| Q |
367 |
tggtcttgt |
375 |
Q |
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| T |
20799611 |
tggtcttgt |
20799619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 40641891 - 40641847
Alignment:
| Q |
331 |
gctgcctcagtaggatgaaattgatcccaaaagatatggtcttgt |
375 |
Q |
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| T |
40641891 |
gctgcctctgtaggatgaaattgatcccagaaaatgtggtcttgt |
40641847 |
T |
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