View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7104_low_1 (Length: 371)
Name: NF7104_low_1
Description: NF7104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7104_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 43037052 - 43037392
Alignment:
| Q |
5 |
tttacattttaaggaaaaattaatgtaaatggtaaactcattaactgcaagtaaaatcaataaggacgttttgtcaatcgaggaaggtttttggtgacaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
43037052 |
tttacattttaaggaaaaattaatgtaaatggtaaactcattaactacgagtaaaatcaataaggatgttttgtcaatcggggaaggtttttggtgacaa |
43037151 |
T |
|
| Q |
105 |
catctggagatatcagaagtgagaatgctgacatgagtaacaataaatcctgtgaaaaacacgatcacctgccagtggaaggcgctttctgcattcagtc |
204 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| ||||||| ||||||| |
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| T |
43037152 |
cacctggagatatcagaagtgagaatgctgacatgagtaacgataaatcatgtgataaacacgatcacctg------gaaggc--tttctgcgttcagtc |
43037243 |
T |
|
| Q |
205 |
aatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccatccaatgggtacacgaaagtgacgaagatctaccaatattatcagaattt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43037244 |
aatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccatccgatgggtacacgaaagtgacgaagatctaccaattttatcagaattt |
43037343 |
T |
|
| Q |
305 |
attcgaagtcatgagtttatcaaaaagagagtttacatacgagttaaat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037344 |
attcgaagtcatgagtttatcaaaaagagagtttacatacgagttaaat |
43037392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 739807 - 739467
Alignment:
| Q |
5 |
tttacattttaaggaaaaattaatgtaaatggtaaactcattaactgcaagtaaaatcaataaggacgttttgtcaatcgaggaaggtttttggtgacaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
739807 |
tttacattttaaggaaaaattaatgtaaatggtaaactcattaactacgagtaaaatcaataaggatgttttgtcaatcggggaaggtttttggtgacaa |
739708 |
T |
|
| Q |
105 |
catctggagatatcagaagtgagaatgctgacatgagtaacaataaatcctgtgaaaaacacgatcacctgccagtggaaggcgctttctgcattcagtc |
204 |
Q |
| |
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|| |||||||||||||||||| ||||| ||||||||||||| ||||||| ||||| |||||| |||||||| |||||| ||||||| ||||||| |
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| T |
739707 |
cacctggagatatcagaagtgtgaatgttgacatgagtaactataaatcatgtgataaacactatcacctg------gaaggc--tttctgcgttcagtc |
739616 |
T |
|
| Q |
205 |
aatctacgcagagttaatcggtccctaaggaagccccgaaagggctgccatccaatgggtacacgaaagtgacgaagatctaccaatattatcagaattt |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
739615 |
aatctacgcagagttaatcggtcccttaggaagccccgaaagggctgccatccgatgggtacacgaaagtgatgaagatctaccaattttatcagaattt |
739516 |
T |
|
| Q |
305 |
attcgaagtcatgagtttatcaaaaagagagtttacatacgagttaaat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739515 |
attcgaagtcatgagtttatcaaaaagagagtttacatacgagttaaat |
739467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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