View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7104_low_2 (Length: 313)
Name: NF7104_low_2
Description: NF7104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7104_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 47128113 - 47128399
Alignment:
| Q |
18 |
acctcatctattgtaagcccatctaaactattttctatgtgctttgcttggatgtaactgttttggtctccataaacacttgggtccagcttgctggcag |
117 |
Q |
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| T |
47128113 |
acctcatctattgtaagcccatctaaactattttctatgtgctttgcttggatggaactgttttggtctccataaacacttgggtccagcttgctggcag |
47128212 |
T |
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| Q |
118 |
gaggaaattcctatatgtacaagaaacattgaaacatattannnnnnnataacaaggataagttttttaattaaaattgtaaactctgaactaaaatata |
217 |
Q |
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| T |
47128213 |
gaggaaattcctacatgtacaagaaacattgaaacatattatttttttataacaaggataagttttttaattaaaattgtaaactctgaactaaaatata |
47128312 |
T |
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| Q |
218 |
agcagaaaatgtagatgtgcttggtcgaaattcagacaagtacatataaacttttttacgtatatttaagtccagagggagtattat |
304 |
Q |
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| T |
47128313 |
agcagaaaatgtagatgtacttggtcgaaattcggacaagtacatataaacttttttacgtatatttaagtccagagggagtattat |
47128399 |
T |
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